PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.K00207.5.p | ||||||||
Common Name | EUGRSUZ_K00207 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 161aa MW: 18674.4 Da PI: 10.0657 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.1 | 3e-30 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRr+g+lKKA+ELSvLC+aevaviifs++gklye+ss Eucgr.K00207.5.p 10 RIENATSRQVTFSKRRKGLLKKAYELSVLCEAEVAVIIFSQNGKLYEFSS 59 8***********************************************96 PP | |||||||
2 | K-box | 58.6 | 2.6e-20 | 85 | 157 | 12 | 84 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 + +l+qe + ++++ie L+ +q +l G++L+s+s++e+q++ +qLe+sl++iR++K +l+ +qi++lq k+ Eucgr.K00207.5.p 85 RYILHLKQETTDMERKIELLEVSQQKLSGQCLGSCSINEIQEIGDQLEQSLSSIRKRKAQLFNDQIQQLQAKQ 157 455689****************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.188 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.13E-36 | 2 | 77 | No hit | No description |
PRINTS | PR00404 | 3.4E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.45E-33 | 3 | 91 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.1E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.569 | 87 | 160 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.3E-18 | 89 | 157 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MARGKTKMRR IENATSRQVT FSKRRKGLLK KAYELSVLCE AEVAVIIFSQ NGKLYEFSSN 60 SEIRKTIDRY RRSTNVDTYQ ANVERYILHL KQETTDMERK IELLEVSQQK LSGQCLGSCS 120 INEIQEIGDQ LEQSLSSIRK RKAQLFNDQI QQLQAKQYFL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-16 | 1 | 70 | 1 | 69 | MEF2C |
5f28_B | 2e-16 | 1 | 70 | 1 | 69 | MEF2C |
5f28_C | 2e-16 | 1 | 70 | 1 | 69 | MEF2C |
5f28_D | 2e-16 | 1 | 70 | 1 | 69 | MEF2C |
6byy_A | 2e-16 | 1 | 70 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 2e-16 | 1 | 70 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 2e-16 | 1 | 70 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 2e-16 | 1 | 70 | 1 | 69 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.K00207.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY263807 | 0.0 | AY263807.1 Eucalyptus grandis SOC1-like floral activator MADS3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010035075.1 | 1e-105 | PREDICTED: MADS-box protein SOC1-like isoform X1 | ||||
Swissprot | Q9FIS1 | 2e-56 | AGL42_ARATH; MADS-box protein AGL42 | ||||
TrEMBL | A0A058ZYB1 | 1e-111 | A0A058ZYB1_EUCGR; Uncharacterized protein | ||||
STRING | XP_010035075.1 | 1e-104 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.3 | 8e-59 | AGAMOUS-like 42 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.K00207.5.p |