PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K00207.4.p
Common NameEUGRSUZ_K00207
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 162aa    MW: 18536.2 Da    PI: 10.1281
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K00207.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.13.1e-301059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rien + rqvtfskRr+g+lKKA+ELSvLC+aevaviifs++gklye+ss
  Eucgr.K00207.4.p 10 RIENATSRQVTFSKRRKGLLKKAYELSVLCEAEVAVIIFSQNGKLYEFSS 59
                      8***********************************************96 PP
2K-box58.72.5e-20851571284
             K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                       +   +l+qe + ++++ie L+ +q +l G++L+s+s++e+q++ +qLe+sl++iR++K +l+ +qi++lq k 
  Eucgr.K00207.4.p  85 RYILHLKQETTDMERKIELLEVSQQKLSGQCLGSCSINEIQEIGDQLEQSLSSIRKRKAQLFNDQIQQLQAKV 157
                       455689****************************************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.188161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-39160IPR002100Transcription factor, MADS-box
CDDcd002652.92E-36277No hitNo description
SuperFamilySSF554554.45E-33391IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.1E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.61987161IPR002487Transcription factor, K-box
PfamPF014861.1E-1889157IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MARGKTKMRR IENATSRQVT FSKRRKGLLK KAYELSVLCE AEVAVIIFSQ NGKLYEFSSN  60
SEIRKTIDRY RRSTNVDTYQ ANVERYILHL KQETTDMERK IELLEVSQQK LSGQCLGSCS  120
INEIQEIGDQ LEQSLSSIRK RKAQLFNDQI QQLQAKVSGG I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-16170169MEF2C
5f28_B1e-16170169MEF2C
5f28_C1e-16170169MEF2C
5f28_D1e-16170169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K00207.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2638070.0AY263807.1 Eucalyptus grandis SOC1-like floral activator MADS3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035075.11e-104PREDICTED: MADS-box protein SOC1-like isoform X1
SwissprotQ9FIS12e-56AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A058ZX341e-112A0A058ZX34_EUCGR; Uncharacterized protein
STRINGXP_010035075.11e-104(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.38e-59AGAMOUS-like 42