PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.K00201.3.p | ||||||||
Common Name | EUGRSUZ_K00201 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 132aa MW: 15139.4 Da PI: 10.8312 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 75 | 6.1e-24 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien++ +qvtfskR +g+lKK +ELSvL +a+vaviifs++g+l+e+ss Eucgr.K00201.3.p 10 RIENTTSQQVTFSKRWTGLLKKVYELSVLGNAKVAVIIFSQKGRLHEFSS 59 8***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.1E-31 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.263 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.72E-32 | 2 | 70 | No hit | No description |
SuperFamily | SSF55455 | 3.66E-26 | 3 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.5E-21 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 132 aa Download sequence Send to blast |
MARGKVQMRR IENTTSQQVT FSKRWTGLLK KVYELSVLGN AKVAVIIFSQ KGRLHEFSSN 60 SKIRKTIDRY CRSTNDAATY QANMEQYILD GTYKKVYIQT QMEAIRTMSW ILLNRRNPTD 120 GGSARAKSEQ H* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.K00201.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018720707.1 | 6e-55 | PREDICTED: MADS-box protein AGL42-like | ||||
Swissprot | Q2QW53 | 5e-29 | MAD13_ORYSJ; MADS-box transcription factor 13 | ||||
TrEMBL | A0A058ZZ44 | 4e-93 | A0A058ZZ44_EUCGR; Uncharacterized protein | ||||
STRING | XP_010035070.1 | 7e-48 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G11880.1 | 2e-29 | AGAMOUS-like 14 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.K00201.3.p |