PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K00200.1.p
Common NameEUGRSUZ_K00200
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 181aa    MW: 20660.8 Da    PI: 9.4726
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K00200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.42.5e-301059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rien + rqvtfskRr+g+lKKA+ELSvLCdaevaviifs++g+lye+ss
  Eucgr.K00200.1.p 10 RIENATSRQVTFSKRRTGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS 59
                      8***********************************************96 PP
2K-box75.31.7e-25861721298
             K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       +   +l+qe + ++++ie L+ ++R+l G++L+s+s+ e+q++ +qLe+sl++iR++K +ll +qi++lq ke++l+een +L +k+
  Eucgr.K00200.1.p  86 QYILRLKQETTDMERKIELLEVSLRKLSGQCLGSCSMDEIQEIGDQLERSLSSIRERKAQLLNDQIQQLQAKERSLKEENAKLLAKV 172
                       5556799****************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.478161IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-40160IPR002100Transcription factor, MADS-box
CDDcd002651.16E-38270No hitNo description
SuperFamilySSF554554.71E-31375IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-31323IPR002100Transcription factor, MADS-box
PfamPF003195.2E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.64288178IPR002487Transcription factor, K-box
PfamPF014861.1E-2290172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MARGKVQMRR IENATSRQVT FSKRRTGLLK KAYELSVLCD AEVAVIIFSQ KGRLYEFSST  60
SEIRKTIDRY CRSTNDAAVY QACMEQYILR LKQETTDMER KIELLEVSLR KLSGQCLGSC  120
SMDEIQEIGD QLERSLSSIR ERKAQLLNDQ IQQLQAKERS LKEENAKLLA KVSPSFPSVL  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-18160160Myocyte-specific enhancer factor 2B
1tqe_Q1e-18160160Myocyte-specific enhancer factor 2B
1tqe_R1e-18160160Myocyte-specific enhancer factor 2B
1tqe_S1e-18160160Myocyte-specific enhancer factor 2B
6c9l_A1e-18160160Myocyte-specific enhancer factor 2B
6c9l_B1e-18160160Myocyte-specific enhancer factor 2B
6c9l_C1e-18160160Myocyte-specific enhancer factor 2B
6c9l_D1e-18160160Myocyte-specific enhancer factor 2B
6c9l_E1e-18160160Myocyte-specific enhancer factor 2B
6c9l_F1e-18160160Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K00200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2638081e-165AY263808.1 Eucalyptus grandis SOC1-like floral activator MADS4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035068.11e-115PREDICTED: MADS-box protein AGL42
SwissprotQ9FIS14e-65AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A058ZY931e-126A0A058ZY93_EUCGR; Uncharacterized protein
STRINGXP_010035070.11e-119(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.32e-67AGAMOUS-like 42