PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.K00193.2.p
Common NameEUGRSUZ_K00193
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 172aa    MW: 19778.7 Da    PI: 10.2879
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.K00193.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.31.3e-251059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rien++ +qvtfskR +g+lKKA+ELSvL +aevaviifs++g+l+e+ss
  Eucgr.K00193.2.p 10 RIENTTSQQVTFSKRWTGLLKKAYELSVLGNAEVAVIIFSQKGRLHEFSS 59
                      8***********************************************96 PP
2K-box68.22.7e-23851711197
             K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                       e+   +l+qe + ++++ie L+ ++R+l G++L+s+s+ ++qq+ +qLe+sl +iR++K +l+ +qi++lq ke++l+ee+ +L +k
  Eucgr.K00193.2.p  85 EQYILRLKQETTDMERKIELLEVSLRKLSGQCLGSCSMDDIQQMGDQLERSLGSIRERKAQLFNDQIQQLQAKERSLKEEKAKLLAK 171
                       55666899**************************************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.217161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-32160IPR002100Transcription factor, MADS-box
CDDcd002658.19E-33279No hitNo description
SuperFamilySSF554555.76E-27376IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-25323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.33188171IPR002487Transcription factor, K-box
PfamPF014864.6E-2190170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MARGKVQMRR IENTTSQQVT FSKRWTGLLK KAYELSVLGN AEVAVIIFSQ KGRLHEFSSN  60
SEIRKTIDRY RRSTNDAATY QASMEQYILR LKQETTDMER KIELLEVSLR KLSGQCLGSC  120
SMDDIQQMGD QLERSLGSIR ERKAQLFNDQ IQQLQAKERS LKEEKAKLLA K*
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.K00193.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2638081e-163AY263808.1 Eucalyptus grandis SOC1-like floral activator MADS4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018720707.11e-121PREDICTED: MADS-box protein AGL42-like
SwissprotQ9FIS16e-60AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A058ZWZ01e-120A0A058ZWZ0_EUCGR; Uncharacterized protein
TrEMBLA0A058ZX021e-120A0A058ZX02_EUCGR; Uncharacterized protein
STRINGXP_010035068.11e-108(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.32e-57AGAMOUS-like 42