PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.K00122.1.p | ||||||||
Common Name | EUGRSUZ_K00122 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 179aa MW: 20332.1 Da PI: 10.4448 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.3 | 3.6e-13 | 97 | 142 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++W+ eE+ ++++ k+lG+g+W+ I++ + +Rt+ q+ s+ qky Eucgr.K00122.1.p 97 KPWSMEEHVTFLEGLKRLGKGDWRGISKNFVPTRTPTQVASHAQKY 142 58*****************************9*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.0E-12 | 90 | 146 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.997 | 91 | 147 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.12E-15 | 93 | 146 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.8E-15 | 94 | 146 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.7E-9 | 95 | 145 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-11 | 97 | 142 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.43E-8 | 98 | 143 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MVKEAVTCGG RKCSHCGYNG HNSRTCNGKG CVKLFGVYVS ENSRASMKKS LSVENMRSSS 60 CNKSSELAVV DPRGYLSDDP NHHSQEAKAA RERKKGKPWS MEEHVTFLEG LKRLGKGDWR 120 GISKNFVPTR TPTQVASHAQ KYFLRQVIND KKKRRTSMFD LHSQDHDHKY WRRIYPIS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 154 | KKKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00573 | DAP | Transfer from AT5G61620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.K00122.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007038261.2 | 6e-65 | PREDICTED: uncharacterized protein LOC18605280 isoform X2 | ||||
Refseq | XP_007038262.2 | 6e-65 | PREDICTED: uncharacterized protein LOC18605280 isoform X1 | ||||
Swissprot | Q9FKF9 | 3e-56 | M5162_ARATH; Probable transcription factor At5g61620 | ||||
TrEMBL | A0A058ZWP6 | 1e-131 | A0A058ZWP6_EUCGR; Uncharacterized protein | ||||
STRING | EOY22762 | 6e-64 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6021 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61620.1 | 2e-53 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.K00122.1.p |
Publications ? help Back to Top | |||
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