PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J03160.1.p

Common Name

EUGRSUZ_J03160

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 150aa MW: 16747.1 Da PI: 8.0786

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J03160.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136	1.4e-42	6	103	2	99
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 CaaCk+lrrkC++dC+lapyfp+++p++fa+vhk+FGasnv+k+l+++p + r +a++++ yeA ar++dPvyG+vg+i++lqqq+ q ++e+ Eucgr.J03160.1.p 6 CAACKYLRRKCPQDCILAPYFPSSNPQRFACVHKIFGASNVTKMLQQVPGHLRAEAAECISYEATARVQDPVYGCVGIITQLQQQITQIHSEI 98 *******************************************************************************************99 PP DUF260 95 allke 99 ++k Eucgr.J03160.1.p 99 MKIKG 103 88775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.133	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-41	6	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MDPTICAACK YLRRKCPQDC ILAPYFPSSN PQRFACVHKI FGASNVTKML QQVPGHLRAE 60 AAECISYEAT ARVQDPVYGC VGIITQLQQQ ITQIHSEIMK IKGEMVAHRS AHPQHLPSPQ 120 PQGEPSWFSS THRQEQDNFQ SDKHLSGNF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-38	6	121	12	127	LOB family transfactor Ramosa2.1
5ly0_B	9e-38	6	121	12	127	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J03160.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018719836.1	1e-105	PREDICTED: LOB domain-containing protein 23-like
Swissprot	P59468	2e-44	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A059AKP7	1e-108	A0A059AKP7_EUCGR; Uncharacterized protein
STRING	Aquca_018_00023.1	8e-52	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	3e-42	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	Eucgr.J03160.1.p