PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J03101.2.p

Common Name

EUGRSUZ_J03101, LOC104423209

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 223aa MW: 24689.3 Da PI: 8.1417

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J03101.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Eucgr.J03101.2.p 69 FSCNYCQRKFYSSQALGGHQNAH 91 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.91E-7	65	96	No hit	No description
PROSITE profile	PS50157	11.427	69	96	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	71	91	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MEGMQKLEED HQRQRESKNS ALILDLSLSR EDSCHGSNPE LDLIQGFDSD SPRNSEDTLP 60 GSETEPRVFS CNYCQRKFYS SQALGGHQNA HKRERTLAKR HRIGGFAYSS MASLPLHGSY 120 NRSLGIQVHS MIHKPPHTYG HDGWSRQSLN QQPAVGRLVV QDSFRVGITT TGSSSNSGIG 180 RFEGVRRIPS AAEGMGGSWW GSVNHLDTKQ DEVQKIDLSL KL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J03101.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018718916.1	1e-165	PREDICTED: zinc finger protein 3
Refseq	XP_018718917.1	1e-165	PREDICTED: zinc finger protein 3
TrEMBL	A0A059AKF3	1e-164	A0A059AKF3_EUCGR; Uncharacterized protein
STRING	XP_010034000.1	1e-165	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25160.1	1e-38	zinc finger protein 3

Link Out ? help Back to Top
Phytozome	Eucgr.J03101.2.p
Entrez Gene	104423209