PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J02819.1.p
Common NameEUGRSUZ_J02819, LOC104424128
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 304aa    MW: 34462.8 Da    PI: 5.1094
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J02819.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.9e-161461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd++l+++vk +G g W + a+  g++R++ +c++rw++yl
  Eucgr.J02819.1.p 14 KGAWSAEEDKILINYVKIHGEGKWGRAAQNAGLKRCARSCRLRWLNYL 61
                      79********************************************97 PP
2Myb_DNA-binding51.42.5e-1667111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+ T++E++l+++++++lG++ W++Ia +++ gRt++++k++w++ 
  Eucgr.J02819.1.p  67 RGNITEDEEDLIIRLHRLLGNR-WALIAGRLP-GRTDNEIKNYWNTI 111
                       7999******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-21664IPR009057Homeodomain-like
PROSITE profilePS5129415.095961IPR017930Myb domain
SuperFamilySSF466894.49E-2911108IPR009057Homeodomain-like
SMARTSM007174.0E-131363IPR001005SANT/Myb domain
PfamPF002492.3E-141461IPR001005SANT/Myb domain
CDDcd001677.54E-111661No hitNo description
PROSITE profilePS5129424.23462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2365115IPR009057Homeodomain-like
SMARTSM007171.9E-1566114IPR001005SANT/Myb domain
PfamPF002494.8E-1567111IPR001005SANT/Myb domain
CDDcd001673.19E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MVRRPYCEKQ GMNKGAWSAE EDKILINYVK IHGEGKWGRA AQNAGLKRCA RSCRLRWLNY  60
LRPGIQRGNI TEDEEDLIIR LHRLLGNRWA LIAGRLPGRT DNEIKNYWNT ILAKKCGSFS  120
PQSCVRKVNH EEETAQCRNH GSMNNFDLVN VDQPSVAGMS GIPVLPQEEK HCFVDKGIGL  180
MNNSCSIDNQ GLFSSLLVGD DGDENHPSFL MNIDNDNDFI MGLPDMDSLL FPGNRTMHED  240
NNYDIFGGYD KNNVMSSSPY DTTSDDQVVR VETEVMHDQQ PSLHVELKKL AMFLDLEDEW  300
KEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J02819.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033737.11e-163PREDICTED: protein ODORANT1
TrEMBLA0A059AIH30.0A0A059AIH3_EUCGR; Uncharacterized protein
STRINGXP_010034807.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.16e-54myb domain protein 5