PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.J02817.1.p | ||||||||
Common Name | EUGRSUZ_J02817, LOC104422986 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 302aa MW: 34008.1 Da PI: 6.2407 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.3 | 2e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde l+++vk +G g W+++a+ g++R++k+c++rw++yl Eucgr.J02817.1.p 14 KGAWSAEEDEVLINYVKIHGEGKWRRVAQNAGLNRCAKSCRLRWLNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.1 | 1.5e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+eE++l+++++++lG++ W++Ia +++ gRt++++k++w++ Eucgr.J02817.1.p 67 RGDITEEEEDLIIRLHRLLGNR-WALIAGRLP-GRTDNEIKNYWNTT 111 6788******************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.904 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.62E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-16 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.35E-12 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-24 | 65 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.039 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.89E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MVRRPCCDKQ GTNKGAWSAE EDEVLINYVK IHGEGKWRRV AQNAGLNRCA KSCRLRWLNY 60 LRPGIKRGDI TEEEEDLIIR LHRLLGNRWA LIAGRLPGRT DNEIKNYWNT TLAKKYGSFS 120 PRSCVRKPNS EQKMLHYQNH GPTNNSDRIN ANQPSGAGTC GIAIIPQEEK HCLEEKSIGL 180 VGNSCSIDNQ DLFSSLLVRD EGAEDHLSFL MSIDINKDFM TGVTGSDSQL CPSNRTAHED 240 NNYDIFGELH NNNLTSSSPF DVTSDDQVVK VESKVMCDQQ LSLHVELKKL ASFLDLEDEW 300 N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-27 | 14 | 115 | 7 | 107 | B-MYB |
1h8a_C | 8e-27 | 13 | 115 | 26 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.J02817.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010033737.1 | 0.0 | PREDICTED: protein ODORANT1 | ||||
TrEMBL | A0A059AI79 | 0.0 | A0A059AI79_EUCGR; Uncharacterized protein | ||||
STRING | XP_010033737.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 6e-57 | myb domain protein 5 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.J02817.1.p |
Entrez Gene | 104422986 |