PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J02429.1.p
Common NameEUGRSUZ_J02429
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WOX
Protein Properties Length: 228aa    MW: 25104.1 Da    PI: 10.0055
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J02429.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-1942103257
                       T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       ++R+t+t++q+++L++l+++   r p+a+++++++++l    +++ ++V++WFqN++a+e++
  Eucgr.J02429.1.p  42 STRWTPTTDQIRILKDLYYNygVRSPTADQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 103
                       58*****************878**************************************97 PP
2Wus_type_Homeobox113.69.6e-3741105265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++tRWtPt++Qi+iL++ly+  G+r+P++++iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
   Eucgr.J02429.1.p  41 SSTRWTPTTDQIRILKDLYYnYGVRSPTADQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 105
                        789***************9868*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-721103IPR009057Homeodomain-like
SuperFamilySSF466891.8E-1133107IPR009057Homeodomain-like
PROSITE profilePS5007110.30138104IPR001356Homeobox domain
SMARTSM003892.7E-440108IPR001356Homeobox domain
CDDcd000861.19E-543105No hitNo description
PfamPF000465.7E-1743103IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MEPQQQQQQQ HQNQEDMNCS NNNGGKGGGT SSSSSYACRQ SSTRWTPTTD QIRILKDLYY  60
NYGVRSPTAD QIQRISARLR QYGKIEGKNV FYWFQNHKAR ERQKKRFFSP DPNSNINGTA  120
APPPTASVVN PQTRGGGRGS GGWSGKLPPP EEPFVLHNKF SNLTPPGLCS SSAAAAGVMA  180
VGQMGGYGYG SVTMEKNFRV SKEALFNWYG AIFILMEGIN QTYLCMK*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J02429.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9539280.0KF953928.1 Eucalyptus grandis cultivar EG5 wuschel (WUS) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033485.21e-86PREDICTED: protein WUSCHEL
SwissprotQ8LL115e-56WUS_PETHY; Protein WUSCHEL
TrEMBLA0A059AIB71e-169A0A059AIB7_EUCGR; Uncharacterized protein
STRINGXP_010033485.11e-121(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52442847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.14e-37WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]