PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J02286.1.p

Common Name

EUGRSUZ_J02286, LOC104423916

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Trihelix

Protein Properties

Length: 418aa MW: 46197.4 Da PI: 4.9341

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J02286.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.7	8.5e-25	77	151	2	76
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 W +e++ Li +rre++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk +++ ++++++++ Eucgr.J02286.1.p 77 WVTEETRSLIGFRREVDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKARHNLQQQEQQQQ 151 *****************************************************************9999754443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.875	69	133	IPR017877	Myb-like domain
CDD	cd12203	2.57E-27	75	140	No hit	No description
Pfam	PF13837	1.6E-17	76	170	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MYLPDKPRPS PPDLSDREMM LEVVTSDPLS LHHQHHQHQL MILADSSDSS GGEDPEPEPE 60 PEPGPELRAT KKRAETWVTE ETRSLIGFRR EVDGLFNTSK SNKHLWEQIS AKMREKGFDR 120 SPTMCTDKWR NLLKEFKKAR HNLQQQEQQQ QSDKGGAGSG KMTYYKELEE LLRERNRNGG 180 AGGGGCCGGG GGGGGVFGGS VATPPKVDHF IQFSDKGFDD SGIQFGPVEA SGQTTINVDR 240 QFDQDGDPLA ITTADAVEAS GVPPWNWRDA PGNVMAGGDQ SCGGRVITVK LGDYVRRVGI 300 DGSGEAIKEA IKSAFRLRTK RAFWLEDENQ VIRSLDRDMP IGNYTLHLDE GITIKVCTFD 360 GSDQIEEKTL YSEEDFRDFL TRGGWICLRE VNGYRSISSI EDLHSGVMYE GVRILGD*

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MYLPDKPRPS PPDLSDREMM LEVVTSDPLS LHHQHHQHQL MILADSSDSS GGEDPEPEPE  60
PEPGPELRAT KKRAETWVTE ETRSLIGFRR EVDGLFNTSK SNKHLWEQIS AKMREKGFDR  120
SPTMCTDKWR NLLKEFKKAR HNLQQQEQQQ QSDKGGAGSG KMTYYKELEE LLRERNRNGG  180
AGGGGCCGGG GGGGGVFGGS VATPPKVDHF IQFSDKGFDD SGIQFGPVEA SGQTTINVDR  240
QFDQDGDPLA ITTADAVEAS GVPPWNWRDA PGNVMAGGDQ SCGGRVITVK LGDYVRRVGI  300
DGSGEAIKEA IKSAFRLRTK RAFWLEDENQ VIRSLDRDMP IGNYTLHLDE GITIKVCTFD  360
GSDQIEEKTL YSEEDFRDFL TRGGWICLRE VNGYRSISSI EDLHSGVMYE GVRILGD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	1e-42	71	167	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J02286.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT055522	8e-32	BT055522.1 Zea mays full-length cDNA clone ZM_BFc0047D18 mRNA, complete cds.
GenBank	KJ727951	8e-32	KJ727951.1 Zea mays clone pUT6049 trihelix transcription factor (THX25) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010034651.1	0.0	PREDICTED: trihelix transcription factor GT-4 isoform X4
Swissprot	Q9FX53	1e-147	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A059AGP3	0.0	A0A059AGP3_EUCGR; Uncharacterized protein
STRING	XP_010034651.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2891	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-141	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Eucgr.J02286.1.p
Entrez Gene	104423916

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]