PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.J02254.1.p | ||||||||
Common Name | EUGRSUZ_J02254 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 431aa MW: 48508.1 Da PI: 5.2412 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 96.4 | 4.5e-30 | 88 | 230 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 lp+G++F+P+d el+ e+L++k+ + + ++e+i++++ i++++P++Lp v+++ ++++fF+++ ++yatg+rk+r+ Eucgr.J02254.1.p 88 LPAGVKFDPSDGELL-EHLAAKCGIGNsrqhVLIDEFIPTLEwnegICYTHPENLP-GVNKDGRSVHFFHRTMNAYATGQRKRRKihdqhnln 178 799************.999999877664554223334555434455**********.6778899********************867777766 PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk+k+v +g ++g +k++v+y +++ +k+ k++Wvmh+y+l Eucgr.J02254.1.p 179 REDVRWHKTGKTKPVAI-DGVHIGWQKIMVLYksSKKGSKAAKSNWVMHQYHL 230 55999************.99************4334667888*********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-34 | 73 | 249 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.499 | 88 | 249 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-12 | 89 | 230 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 431 aa Download sequence Send to blast |
MGAPPSLWGC ARCLVRSCGS GLEPRLRGGE RMESGRSWLV DGRSIAKKVK NATLSTSCQI 60 KDCGANRECP NCHFFIDNTD VSPEWPGLPA GVKFDPSDGE LLEHLAAKCG IGNSRQHVLI 120 DEFIPTLEWN EGICYTHPEN LPGVNKDGRS VHFFHRTMNA YATGQRKRRK IHDQHNLNRE 180 DVRWHKTGKT KPVAIDGVHI GWQKIMVLYK SSKKGSKAAK SNWVMHQYHL GADKEEKDGE 240 YVVSKIFLQQ PKETEKNNNN NKENNESMDI DYQDVTTLQT NPRTPKPNPL NPHQTEKFGL 300 LDDVAEGDMK SSDQDIFKDI QLEDDELYPE WLAGESQPLE DFDFGYIDGL LFHEEPSRSH 360 SPSNDRGCNL VPPTSLPEIN EVVNEVVTDE NATYGISELA KLDFDSPPDF LHPELPFGSQ 420 EGIFEWLGRI * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.J02254.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010033337.1 | 0.0 | PREDICTED: NAC domain-containing protein 8 isoform X1 | ||||
Swissprot | Q6NQK2 | 4e-85 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A059AGU7 | 0.0 | A0A059AGU7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010033337.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5045 | 26 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G25580.1 | 7e-81 | NAC family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.J02254.1.p |