PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J02212.1.p
Common NameEUGRSUZ_J02212, LOC104423904
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 212aa    MW: 24322.3 Da    PI: 9.4763
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J02212.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding621.2e-191461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g WT+eEd++l+++v+  G+g W+tIa+++g++R++k+c++rw +yl
  Eucgr.J02212.1.p 14 KGLWTEEEDKILIHYVEANGKGKWNTIAKRIGLRRCGKSCRLRWMNYL 61
                      678*******************************************97 PP
2Myb_DNA-binding60.24.3e-1967112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       r+++++eE++l+++++k+lG++ W++Ia++++ gRt++q+k++w+++l
  Eucgr.J02212.1.p  67 RDSFSEEEEDLIIRLHKLLGNR-WSLIAKRVP-GRTDNQVKNYWNTHL 112
                       789*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.82961IPR017930Myb domain
SuperFamilySSF466893.45E-3112108IPR009057Homeodomain-like
SMARTSM007174.2E-161363IPR001005SANT/Myb domain
PfamPF002493.7E-181461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-241568IPR009057Homeodomain-like
CDDcd001677.11E-121761No hitNo description
PROSITE profilePS5129428.20262116IPR017930Myb domain
SMARTSM007179.9E-1966114IPR001005SANT/Myb domain
PfamPF002495.4E-1867112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-2769116IPR009057Homeodomain-like
CDDcd001674.14E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MAKATNGREN ERKKGLWTEE EDKILIHYVE ANGKGKWNTI AKRIGLRRCG KSCRLRWMNY  60
LSPDVKRDSF SEEEEDLIIR LHKLLGNRWS LIAKRVPGRT DNQVKNYWNT HLSKKLGVQV  120
HSARSSTSAS SRSLQPSSTS TYPCSTSSHD AASEKKLDKD ARPDCTKWDT REPTIRDQST  180
SHFWDFESEL GELGMMEFLQ GQCRDLSWLN S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-301111624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Regulates the epidermal cell fate specification. Mediates the formation of columellae and accumulation of mucilages on seed coats. Controls the elongation of epidermal cells positively in roots but negatively in stems, leading to the promotion of primary roots elongation and repression of leaves and stems elongation, respectively. Ovoids ectopic root-hair formation, probably by inducing GL2 in roots. Controls trichome initiation and branching. {ECO:0000269|PubMed:11437443, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15668208, ECO:0000269|PubMed:15728674}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J02212.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034640.11e-156PREDICTED: transcription factor MYB23
SwissprotQ962766e-69MYB23_ARATH; Transcription factor MYB23
TrEMBLA0A059AFQ61e-155A0A059AFQ6_EUCGR; Uncharacterized protein
STRINGXP_010034640.11e-156(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.13e-65myb domain protein 66
Publications ? help Back to Top
  1. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  2. Yu D, et al.
    RPN1a, a subunit of the 26S proteasome, controls trichome development in Arabidopsis.
    Plant Physiol. Biochem., 2015. 88: p. 82-8
    [PMID:25676129]
  3. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  4. Kohanová J, et al.
    Root hair abundance impacts cadmium accumulation in Arabidopsis thaliana shoots.
    Ann. Bot., 2018. 122(5): p. 903-914
    [PMID:29394308]