PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.J02073.1.p | ||||||||
Common Name | EUGRSUZ_J02073, LOC104422514 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 249aa MW: 28330.5 Da PI: 7.4544 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.8 | 6.1e-19 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++l v++++++G++ W++Iar+++ gRt++++k++w++y+ Eucgr.J02073.1.p 61 RGKMTPQEEKLVVELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTYM 106 89********************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.658 | 1 | 55 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 4.9E-22 | 41 | 111 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-9 | 41 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.278 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-17 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-17 | 61 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.82E-12 | 63 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 68 | 107 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MDRTGGLQAG LLCGLVWRST MGFYSQGFRF EGGGRQIIGL NRTGKSCRLR WVNYLHPGLK 60 RGKMTPQEEK LVVELHAKWG NRWSRIARKL PGRTDNEIKN YWRTYMRKKA QERKHPIPPS 120 SSSSSSSNCY SSTSNNPPAD LLPFQATGEV SYYDTGGPNV STPTRKKSEE KEDHEKGDSM 180 DDIWKDITAS EETNDITQSY NCFSDESYSF TCPQMASPAW ELYSDSLWKM DEEEGEMLLS 240 MSNHYSSW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-17 | 42 | 110 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 3e-17 | 42 | 110 | 91 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-17 | 42 | 110 | 91 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-17 | 42 | 110 | 60 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 1e-17 | 42 | 110 | 37 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-17 | 42 | 110 | 37 | 105 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.J02073.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010033161.1 | 0.0 | PREDICTED: transcription factor MYB48 isoform X1 | ||||
Swissprot | Q9LX82 | 2e-68 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A059AGB7 | 0.0 | A0A059AGB7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010033162.1 | 1e-155 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2502 | 27 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.4 | 4e-77 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.J02073.1.p |
Entrez Gene | 104422514 |
Publications ? help Back to Top | |||
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