PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.J02044.1.p | ||||||||
Common Name | EUGRSUZ_J02044, LOC104422487 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 764aa MW: 86090.5 Da PI: 6.7057 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 367.9 | 1.4e-112 | 391 | 760 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++lL+ cA+avss+d + a+ +L +++++asp+gd qRla+yf+++L+arl +++s++y+al +++ts ++ l+a++++ ++P+ ++ Eucgr.J02044.1.p 391 LRTLLILCAQAVSSDDRRTANDYLRQIRQHASPSGDGSQRLAHYFANGLEARLEGTGSQVYAALGSKKTS---AVDLLKAYHVYRTAFPFQRV 480 5789************************************************************999999...9******************* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 +++ +I+ +e+++++HiiDf+is+G+QWpa++ L+ R++gpp+lRiTg++ p+ g +e+++etg+ La+f+++++vpfe+n+ +a+ Eucgr.J02044.1.p 481 ANMFVGDMIMHLAEKATTLHIIDFGISNGFQWPAFISRLSRRTGGPPKLRITGIELPQRGfrPAEKVQETGRHLAQFCKRFNVPFEYNA-IAQ 572 **********************************************************99*****************************.7** PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 +++++++ ++++++gE+++Vn +++ ++llde+v l+++rd+vL+l+++++P+++v + + + +++ F++rf eal +ysalfd+++++l+r Eucgr.J02044.1.p 573 KWDTIKIGDIKIRNGETIVVNTMFRFKNLLDETVVLNNPRDSVLNLIRKIRPHLFVQAIVNGSFGAPFFVTRFREALFHYSALFDAFDTNLGR 665 ********************************************************************************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 +++ r +E+e++gre+ nv+aceg+er+er et+++W+ r ++aGFk++pl+ ++k ++ l+++++d + v+e+ +++++gWk+r L++ Eucgr.J02044.1.p 666 DNQMRLLYEKEFFGREAINVIACEGTERVERPETYKQWQIRNMRAGFKQLPLGPAVMKRLRSKLEQFHDD-FVVDEDGQWMLQGWKGRILFAS 757 ********************************************************************66.********************** PP GRAS 371 SaW 373 S W Eucgr.J02044.1.p 758 SWW 760 **9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.389 | 365 | 742 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.7E-110 | 391 | 760 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 764 aa Download sequence Send to blast |
MIMEPRVTRF SGSLSAFKLD DETLLPFSDQ RANFANGFDR AGPSPDLGFA HKPFFPSDPR 60 YCDSAPSSLV SAEADLPSDD SDFSETVFRY INHMLLEEDM EENPSTFHDP LALQAAEKSL 120 YEALSEPYPS EANSSPPFMD SPDNNYSGNS SDYGKSSPSS NTSGSNFADH QWLGDLGDGR 180 NNLPRSSVTG DFIFQSTVNA HVQPSFSSRN SFLSNGNRTK ASLGSGPLFL NFSTESQSVL 240 QFQRGVEEAS KFLPQGTQLF IDLEKSSVNS WFKERKSLNV VKVEKDESDL LPLNGISGKK 300 NHQREDSEFE DERSNKQTAV YVDDTELSEM MDKLLVCHIK GKSQDSNADE SSKKEVSKSL 360 QQNRQTHTAD GGKFHNKKPT PTSNMTEMVD LRTLLILCAQ AVSSDDRRTA NDYLRQIRQH 420 ASPSGDGSQR LAHYFANGLE ARLEGTGSQV YAALGSKKTS AVDLLKAYHV YRTAFPFQRV 480 ANMFVGDMIM HLAEKATTLH IIDFGISNGF QWPAFISRLS RRTGGPPKLR ITGIELPQRG 540 FRPAEKVQET GRHLAQFCKR FNVPFEYNAI AQKWDTIKIG DIKIRNGETI VVNTMFRFKN 600 LLDETVVLNN PRDSVLNLIR KIRPHLFVQA IVNGSFGAPF FVTRFREALF HYSALFDAFD 660 TNLGRDNQMR LLYEKEFFGR EAINVIACEG TERVERPETY KQWQIRNMRA GFKQLPLGPA 720 VMKRLRSKLE QFHDDFVVDE DGQWMLQGWK GRILFASSWW VPI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 8e-48 | 398 | 762 | 26 | 380 | Protein SCARECROW |
5b3h_A | 7e-48 | 398 | 762 | 25 | 379 | Protein SCARECROW |
5b3h_D | 7e-48 | 398 | 762 | 25 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.J02044.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010033118.1 | 0.0 | PREDICTED: scarecrow-like protein 14 isoform X1 | ||||
Refseq | XP_018719600.1 | 0.0 | PREDICTED: scarecrow-like protein 14 isoform X1 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A059AG79 | 0.0 | A0A059AG79_EUCGR; Uncharacterized protein | ||||
STRING | XP_010033118.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.J02044.1.p |
Entrez Gene | 104422487 |
Publications ? help Back to Top | |||
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