PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J02043.1.p
Common NameEUGRSUZ_J02043
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 714aa    MW: 80217 Da    PI: 5.2126
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J02043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2661.2e-813936881300
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL+ cA+avss+d + a+ +L++++++asp gd  qRla+yf+ +L+arl +++s++y  l +++ts    ++ l+a+++ + ++P+ k+
  Eucgr.J02043.1.p 393 LRTLLILCAQAVSSDDRRTADDYLKQIRQHASPFGDGSQRLAHYFVDGLEARLGGTGSQVY--LGSKKTS---AVDILKAHQVCHMACPFQKM 480
                       5789***************************************************999999..6666666...89****************** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       +++ a  +I + +e+++++HiiDf+i +G+Q p ++  L+ R++gpp+lRiTg++ p+ g   +e+++etg+ Lak++++++vpfe+n+ +a+
  Eucgr.J02043.1.p 481 ANVFASYMITDLAEKATTLHIIDFGILYGFQRPVFIFILSRRTGGPPKLRITGIEFPQRGfrPAERVQETGRHLAKLCKQFNVPFEYNA-IAQ 572
                       ***********************************************************9*****************************.7** PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       +++++++ +L++++gE++aVn +++ ++llde+v l++++d+vL+l+++++P+++v +  + + + + F++rf eal +ys+lfd+++++l r
  Eucgr.J02043.1.p 573 EWDTIKIGDLKIRNGETIAVNTMFRFKNLLDETVVLNNPKDSVLNLIRKIRPHLFVQAIVNGSFSVPFFVTRFREALFHYSSLFDAFDTNLER 665
                       ********************************************************************************************* PP

              GRAS 278 eseerikvErellgreivnvvac 300
                       +++ r ++E+e++gre+ nv+a 
  Eucgr.J02043.1.p 666 DNQMRLTYEKEFFGREAINVIAY 688
                       *********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.731367713IPR005202Transcription factor GRAS
PfamPF035144.3E-79393688IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    Send to blast
MIMEPRVNGF SGSPSALMFD NETLLPFPDQ RANLANGFGR DGQSRDVGFV DKPFFPSDPR  60
YCDSAPSSLV SVEADFPSED SDFSETVFRY INQMLLEEDM EEKSSMSHNP LALQAVEKSL  120
HEALGETCRS EATPSPPFME SPDNNYLGNS NDYGKSSPSR NTGGSNFADH QWLGDFGDGR  180
NYMRRSSDIG DFIFQSTVNA HVQPSSSLPN SFLSNGNRTS ASLGSGPLFS NFLTGSQSVL  240
QFQRGVEEAS KFLPKVTQLF IDLEKSSVNS WSKEKKSLNV VNLEEDESDI LPLSGIRGKK  300
NHQREDSEFE NERSNKQTAV YVDDTDTELS EMIDKLLLFK IKNRSLDFNA DESSEKEVNE  360
SLQQSRQTRT ADGCKFHNEK PTPTNNVTEM VDLRTLLILC AQAVSSDDRR TADDYLKQIR  420
QHASPFGDGS QRLAHYFVDG LEARLGGTGS QVYLGSKKTS AVDILKAHQV CHMACPFQKM  480
ANVFASYMIT DLAEKATTLH IIDFGILYGF QRPVFIFILS RRTGGPPKLR ITGIEFPQRG  540
FRPAERVQET GRHLAKLCKQ FNVPFEYNAI AQEWDTIKIG DLKIRNGETI AVNTMFRFKN  600
LLDETVVLNN PKDSVLNLIR KIRPHLFVQA IVNGSFSVPF FVTRFREALF HYSSLFDAFD  660
TNLERDNQMR LTYEKEFFGR EAINVIAYGP DSVLIQGILI DWAVLVEPQS LLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-3540069226310Protein SCARECROW
5b3h_A4e-3540069225309Protein SCARECROW
5b3h_D4e-3540069225309Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J02043.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033117.10.0PREDICTED: scarecrow-like protein 14 isoform X2
RefseqXP_018719601.10.0PREDICTED: scarecrow-like protein 14 isoform X2
TrEMBLA0A059AH010.0A0A059AH01_EUCGR; Uncharacterized protein
STRINGXP_010033117.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14