PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J02042.1.p
Common NameEUGRSUZ_J02042, LOC104422484
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 766aa    MW: 86276.4 Da    PI: 6.3677
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J02042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS353.92.5e-1083937621373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL+ cA+avss+d + a+ +L++++++asp gd  qRla+yf+++L+arl +++s++y+al +++ts    ++ l+a++l   ++P+ k+
  Eucgr.J02042.1.p 393 LRTLLILCAQAVSSDDRRTADDYLKQIRQHASPFGDGSQRLAHYFANGLEARLGGTGSQIYAALGSKKTS---AVDILKAHHLCRMACPFQKM 482
                       5789************************************************************999999...9******************* PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       + + aN +I++ +e+++++HiiDf+i +G+QWp  +  L+ R++gpp+lRiTg++ p+ g   +e+++ tg+ Lak++++++vpfe+n  +a+
  Eucgr.J02042.1.p 483 AIVFANYMIMDLAEKATTLHIIDFGILYGFQWPVVIFLLSRRTGGPPKLRITGIEFPQCGfrPAERVQVTGRHLAKLCKQFNVPFEYNG-IAQ 574
                       **********************************************************9999***************************.7** PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       +++++++ +L++++gE++aVn +++ ++llde+v l+++rd+vL+l+++++P+++v +  + + + + F++rf eal +ysalfd+++++l r
  Eucgr.J02042.1.p 575 EWDTIKIGDLKIRKGETIAVNTMFRFKNLLDETVVLNNPRDSVLNLIRKIRPHLFVQAIVNGSFSVPFFVTRFREALFHYSALFDAFDTNLER 667
                       ********************************************************************************************* PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                        ++ r ++E+e++gre+ nv+aceg+er+er et+++W+ r ++aGFk++pl    +k+ ++ l ++++d + v+e+ +++++gWk+r L + 
  Eucgr.J02042.1.p 668 YNRMRLMYEKEFFGREAINVIACEGTERVERPETYKQWQVRNKRAGFKQLPLAPALMKKLRSKLGEFPDD-FVVDEDGHWMLQGWKGRILRAS 759
                       ********************************************************************66.********************** PP

              GRAS 371 SaW 373
                       S+W
  Eucgr.J02042.1.p 760 SCW 762
                       *** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.687367744IPR005202Transcription factor GRAS
PfamPF035148.5E-106393762IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MIMEPRVTGF SGSPSALMFD NETLLPFPDQ RANLAYGFGR DGQSRDVGFV DKPFFPSDPR  60
YCDSAPSSLV SVEADFPSED SDFSETVFRY INQMLLEEDM EEKSSMSHDP LALQAAEKSL  120
HEALGETCRS EATPSPPFME SPDNNYLGNS NDYGKSSPSR NTGGSNFADH QWLGDFGDGR  180
NYMRRSSDIG DFIFQSTVNA HVQPSSSLPN SFLSNGNRTN ASLGSGPLFP NFLTGSQSVL  240
QFQRGVEEAS KFLPKVTQLV IDLEKSSVNS WSKEKKSLNV VNLEEDESDL LPLGGIRGKK  300
NHQREDSEFE DERSNKQTAV YVDDIDTELS KMMDKMLLLK IKGRSRDSNT DESSEKEVNE  360
SLQQSRRTQA SDGGKFHDIT PTPTSNVTEM VDLRTLLILC AQAVSSDDRR TADDYLKQIR  420
QHASPFGDGS QRLAHYFANG LEARLGGTGS QIYAALGSKK TSAVDILKAH HLCRMACPFQ  480
KMAIVFANYM IMDLAEKATT LHIIDFGILY GFQWPVVIFL LSRRTGGPPK LRITGIEFPQ  540
CGFRPAERVQ VTGRHLAKLC KQFNVPFEYN GIAQEWDTIK IGDLKIRKGE TIAVNTMFRF  600
KNLLDETVVL NNPRDSVLNL IRKIRPHLFV QAIVNGSFSV PFFVTRFREA LFHYSALFDA  660
FDTNLERYNR MRLMYEKEFF GREAINVIAC EGTERVERPE TYKQWQVRNK RAGFKQLPLA  720
PALMKKLRSK LGEFPDDFVV DEDGHWMLQG WKGRILRASS CWVPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-4840076426380Protein SCARECROW
5b3h_A1e-4840076425379Protein SCARECROW
5b3h_D1e-4840076425379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J02042.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033115.10.0PREDICTED: scarecrow-like protein 33
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A059AFY60.0A0A059AFY6_EUCGR; Uncharacterized protein
STRINGXP_010033115.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]