PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J02041.1.p
Common NameEUGRSUZ_J02041
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 818aa    MW: 92755.8 Da    PI: 8.4492
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J02041.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS346.35.1e-1063927611373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL+ cA+avss+d + a+ +L++++++asp gd  qRla+yf+++L+arl +++s++y++l +++ts    ++ l+++++   ++P+ k+
  Eucgr.J02041.1.p 392 LRTLLILCAQAVSSDDRRTADDYLKQIRQHASPFGDGSQRLAHYFANGLEARLGGTGSQIYASLGSKKTS---AVDILKVHHICRMACPFEKM 481
                       5789************************************************************999998...999***************** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       +++ aN +I++ +e+++++HiiDf+i  G+QWp ++  L+ R++gpp+lRiTg++ p+ g   +e+++ tg+ Lak++++++vpfe+n  +a+
  Eucgr.J02041.1.p 482 ANVFANYMIMDLAEKATTLHIIDFGILCGFQWPVFIFLLSRRTGGPPKLRITGIKFPQRGfrPAERVQVTGRHLAKLCKQFNVPFEYNG-IAQ 573
                       **********************************************************99*****************************.7** PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       +++++++ +L++++gE++aVn +++ ++llde+v l+++rd+vL+l+++++P+++v +  + + + + F++rf eal +ysalfd+++++l r
  Eucgr.J02041.1.p 574 EWDTIKIGDLKIRKGETIAVNTMFRFKNLLDETVVLNNPRDSVLNLIRKIRPHLFVQAIVNGSFSVPFFVTRFREALFHYSALFDAFDTNLER 666
                       ********************************************************************************************* PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                        ++ r ++E+e++gre+ nv+aceg er+er et+++W+ r ++aGFk++pl    +k+ ++   ++++d ++v+e+  ++++gWk+r L + 
  Eucgr.J02041.1.p 667 YNRMRLMYEKEFFGREAINVIACEGMERVERPETYKRWQIRNMRAGFKQLPLAPALMKKLRYRSGEFHDD-FMVDEDGLWMLQGWKGRILHAS 758
                       ********************************************************************66.********************** PP

              GRAS 371 SaW 373
                       S+W
  Eucgr.J02041.1.p 759 SCW 761
                       *** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.453366743IPR005202Transcription factor GRAS
PfamPF035141.7E-103392761IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MIMEPHVTGF SGSPSALMFD NETLLPFPDQ RANLANGFGR DGQSRDVGFV DKPFFPSDPR  60
YCDSAPSSLV SVEADFPSED SVSETVFRYI NQMLLEEDME EKSSMSHDPL ALQAAEKSLH  120
EALGETCRSE ANPSPPFMER PDNNYSGNSS DYAKSRPSRN TSGSNFADHQ WLGNFGDGRN  180
YMRRSSVIGD FIFQSTVNAH VQPSSSVPNS FLSNGNRTNA SLGSGPLFPN FLTGSQSVLQ  240
FQRGMEEASK FLPKGTQLFI DPEKSSENSW FKEKKSLNVV NLEEDESDIL PLSGIRGKKN  300
HQREDSEFED ERSNKQTAVY VDDIDTELSE MMDKMLLFKI KRRSRDSNAD ESSGKEVNES  360
LRRSRRTHAA DGGKFHDNTP TPTSNVTEMV DLRTLLILCA QAVSSDDRRT ADDYLKQIRQ  420
HASPFGDGSQ RLAHYFANGL EARLGGTGSQ IYASLGSKKT SAVDILKVHH ICRMACPFEK  480
MANVFANYMI MDLAEKATTL HIIDFGILCG FQWPVFIFLL SRRTGGPPKL RITGIKFPQR  540
GFRPAERVQV TGRHLAKLCK QFNVPFEYNG IAQEWDTIKI GDLKIRKGET IAVNTMFRFK  600
NLLDETVVLN NPRDSVLNLI RKIRPHLFVQ AIVNGSFSVP FFVTRFREAL FHYSALFDAF  660
DTNLERYNRM RLMYEKEFFG REAINVIACE GMERVERPET YKRWQIRNMR AGFKQLPLAP  720
ALMKKLRYRS GEFHDDFMVD EDGLWMLQGW KGRILHASSC WALKQNQESS QAKKISKSDK  780
SRGKSRHKIH SDYHFKRRNL IFTNDSNPST IIIVIIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-4539976126378Protein SCARECROW
5b3h_A8e-4539976125377Protein SCARECROW
5b3h_D8e-4539976125377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J02041.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033116.10.0PREDICTED: scarecrow-like protein 33
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A059AFP70.0A0A059AFP7_EUCGR; Uncharacterized protein
STRINGXP_010033116.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]