PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.J02040.1.p | ||||||||
Common Name | EUGRSUZ_J02040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 676aa MW: 75695.8 Da PI: 6.778 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 323 | 6e-99 | 329 | 664 | 1 | 336 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilk 92 l++lL+ cAea+s+gd ++a+ lL++++ ++sp gd+ qR+a+ f+ AL arla+ v++++k l ++t+ e l+++++ ++++P+ + Eucgr.J02040.1.p 329 LRNLLILCAEAISAGDSRNASDLLQQIRLHSSPIGDASQRVAHAFADALDARLAGtPVQSMSKYLCQKRTP---IGEILKIYHTHYKACPFNR 418 6899***************************************************5666666666555555...99***************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183 + aN++Il+ +e++e++HiiDf+i+ G+QWp L+q L+ Rp+gpp+lR+Tg++ pe+g ++++ e+g Lak++e++gvpfe+n++v+ Eucgr.J02040.1.p 419 IVISFANNMILKVAETAETLHIIDFGIKLGFQWPLLIQLLSRRPGGPPKLRLTGIELPEQGfkPEQRIVEVGCHLAKYCEQFGVPFEYNPIVS 511 ***********************************************************9999****************************** PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 +++e++++eeL++ ++E+laVn+ ++ + llde+v ++++rd+vLkl+++++P+++v++ + ns+ F+ rf +al ++sal+d+++ +++ Eucgr.J02040.1.p 512 QHWETINVEELKIGRNEVLAVNCLYRFKCLLDETVVVNNPRDAVLKLIREMRPDIFVLSVVNGTFNSPFFVPRFRQALFHFSALYDMFDCNVS 604 ********************************************************************************************* PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336 r++++r +Er++ gr+++nv+aceg er+er et+++W++r+++aGFk+ p+++ ++k Eucgr.J02040.1.p 605 RDNNHRLLIERQFYGRQVTNVIACEGWERVERPETYKQWHARISKAGFKQCPMDKAMMKI 664 *****************************************************9988875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 60.062 | 303 | 676 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.1E-96 | 329 | 664 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 676 aa Download sequence Send to blast |
MNSEAKLSDL CSSGTLDGEG ASNSDGNDFS KQILKYIRSM LMEENREDKP CFLYDPSVLW 60 ATEKSLHEVI VLGEKHPALP NHTSEFVCQN APSTDVLFPR TGHDCSNSNG TSNIGCTDNF 120 GEKQTLADST ENRGSTFLAS PSTDCFYQST DLYASRPSSN HPKGLANYVN LILATPTSEF 180 PLQYDSLGAS QRKGGLEEAC KFLSWDTAGV DATNNGNMSV AIKKRGLKVG MDEEAQQQGP 240 FNGMRGRKND GREGNFNKRS AASTEEIEVS EMFDRILLCD EEPEPFASTD GKTSNAAVRN 300 LSLVAHTQGS SGHKNRAKKA KNSEDMVDLR NLLILCAEAI SAGDSRNASD LLQQIRLHSS 360 PIGDASQRVA HAFADALDAR LAGTPVQSMS KYLCQKRTPI GEILKIYHTH YKACPFNRIV 420 ISFANNMILK VAETAETLHI IDFGIKLGFQ WPLLIQLLSR RPGGPPKLRL TGIELPEQGF 480 KPEQRIVEVG CHLAKYCEQF GVPFEYNPIV SQHWETINVE ELKIGRNEVL AVNCLYRFKC 540 LLDETVVVNN PRDAVLKLIR EMRPDIFVLS VVNGTFNSPF FVPRFRQALF HFSALYDMFD 600 CNVSRDNNHR LLIERQFYGR QVTNVIACEG WERVERPETY KQWHARISKA GFKQCPMDKA 660 MMKIYIDKLE AYHKDM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-40 | 333 | 657 | 8 | 328 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.J02040.1.p |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010034598.2 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
TrEMBL | A0A059AF19 | 0.0 | A0A059AF19_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010034598.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-162 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.J02040.1.p |