PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J01580.1.p
Common NameEUGRSUZ_J01580, LOC104423723
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 208aa    MW: 24419.7 Da    PI: 9.272
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J01580.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-171158148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd ll  +v+++G g W++++++ g++R++k+c++rw++yl
  Eucgr.J01580.1.p 11 KGSWTEEEDVLLRSCVQRYGEGEWHRVPQRAGLNRCRKSCRLRWLNYL 58
                      799*******************************************97 PP
2Myb_DNA-binding46.96.3e-1564109148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++  +E + +++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Eucgr.J01580.1.p  64 RGKFQDDEVDMIIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 109
                       8999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.562662IPR017930Myb domain
SuperFamilySSF466895.24E-288105IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-22860IPR009057Homeodomain-like
SMARTSM007171.2E-141060IPR001005SANT/Myb domain
PfamPF002496.2E-171158IPR001005SANT/Myb domain
CDDcd001671.04E-91358No hitNo description
Gene3DG3DSA:1.10.10.609.2E-2461112IPR009057Homeodomain-like
SMARTSM007173.1E-1463111IPR001005SANT/Myb domain
PROSITE profilePS5129419.49963113IPR017930Myb domain
PfamPF002491.6E-1364109IPR001005SANT/Myb domain
CDDcd001676.36E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MQKGSSFGLR KGSWTEEEDV LLRSCVQRYG EGEWHRVPQR AGLNRCRKSC RLRWLNYLKP  60
NIKRGKFQDD EVDMIIRLHK LLGNRWSLIA GRLPGRTAND VKNYWNTHLR KLMTCQGKPE  120
NEKPQDLVKV EVIRPRPRTI SKNFTSLGVE AYRELNESRE PRVHDVPPNR SPWIDDDFEL  180
RSETTEAWLD CWSGLSFDAE SIWDWPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2291115106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J01580.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM7730234e-94HM773023.1 Syzygium malaccense MYB transcription factor (MYB) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034481.11e-152PREDICTED: transcription factor MYB114 isoform X2
SwissprotQ9FNV95e-63MY113_ARATH; Transcription factor MYB113
TrEMBLA0A059AEG21e-151A0A059AEG2_EUCGR; Uncharacterized protein
STRINGXP_010034481.11e-151(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-65myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]