PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.J01578.1.p | ||||||||
Common Name | EUGRSUZ_J01578 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 208aa MW: 24450.8 Da PI: 9.1286 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.3 | 6.6e-17 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll +v+++G g W++++r+ g++R++k+c+ rw++yl Eucgr.J01578.1.p 11 KGSWTEEEDVLLRSCVQRYGEGEWHRVPRRAGLNRCRKSCRMRWLNYL 58 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 46 | 1.2e-14 | 64 | 108 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ +E + +++++k+lG++ W++Ia +++ gRt++++k++w+++ Eucgr.J01578.1.p 64 RGKFQDDEVDMIIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTH 108 8999******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.933 | 6 | 62 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 8 | 60 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.11E-28 | 8 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-14 | 10 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 11 | 58 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.40E-9 | 13 | 58 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-23 | 61 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-13 | 63 | 111 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.485 | 63 | 113 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.9E-13 | 64 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.87E-8 | 69 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MQKGSSFGLR KGSWTEEEDV LLRSCVQRYG EGEWHRVPRR AGLNRCRKSC RMRWLNYLKP 60 NIKRGKFQDD EVDMIIRLHK LLGNRWSLIA GRLPGRTAND VKNYWNTHQR KLMTCQGKPE 120 NEKPQDLVKV EVIRPRPRTV CKNFSSLGVE ACRELNESRE PRVHDVPPNR SPWIDDDFEL 180 RSETTEPWLD CWSGLSFDAE SIWDWLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-22 | 9 | 114 | 5 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.J01578.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM773023 | 3e-88 | HM773023.1 Syzygium malaccense MYB transcription factor (MYB) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010034481.1 | 1e-145 | PREDICTED: transcription factor MYB114 isoform X2 | ||||
Swissprot | Q9FNV9 | 6e-61 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A059ADH2 | 1e-150 | A0A059ADH2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010034478.1 | 1e-151 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 3e-63 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.J01578.1.p |
Publications ? help Back to Top | |||
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