PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.J01576.1.p | ||||||||
Common Name | EUGRSUZ_J01576, LOC104423717 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 208aa MW: 24446.8 Da PI: 9.272 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.8 | 1.1e-17 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll +v+++G g W++++++ g++R++k+c++rw++yl Eucgr.J01576.1.p 11 KGSWTEEEDVLLRSCVQRYGEGEWHRVPQRAGLNRCRKSCRLRWLNYL 58 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 44.2 | 4.5e-14 | 64 | 107 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++ +E + +++++k+lG++ W++Ia +++ gRt++++k++w+ Eucgr.J01576.1.p 64 RGKFQDDEVDMIIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNA 107 8999******************.*********.***********95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.116 | 6 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-28 | 8 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 10 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-17 | 11 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-22 | 12 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.13E-9 | 13 | 58 | No hit | No description |
PROSITE profile | PS51294 | 17.862 | 63 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 5.5E-13 | 63 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-12 | 64 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-22 | 66 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.05E-8 | 69 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence Send to blast |
MQKGSLFGLR KGSWTEEEDV LLRSCVQRYG EGEWHRVPQR AGLNRCRKSC RLRWLNYLKP 60 NIKRGKFQDD EVDMIIRLHK LLGNRWSLIA GRLPGRTAND VKNYWNAHQR KLMTCQGKPE 120 NEKPQDLVKV EVIRPRPRTI SKNFSSLGVE AYRELNESRE PRVHDVPPNR SPWIDDDFEL 180 RSETMEAWLD CWSGLSFDAE SIWDWPV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-22 | 9 | 107 | 5 | 102 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.J01576.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HM773023 | 2e-92 | HM773023.1 Syzygium malaccense MYB transcription factor (MYB) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010034476.1 | 1e-152 | PREDICTED: transcription factor MYB114 | ||||
Swissprot | Q9FNV9 | 1e-61 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A059AFG3 | 1e-151 | A0A059AFG3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010034476.1 | 1e-151 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66370.1 | 4e-64 | myb domain protein 113 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.J01576.1.p |
Entrez Gene | 104423717 |
Publications ? help Back to Top | |||
---|---|---|---|
|