PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.J01573.1.p | ||||||||
Common Name | EUGRSUZ_J01573, LOC104423714 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 208aa MW: 24388.7 Da PI: 9.738 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 9.6e-17 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll v+++G g W++++++ g++R++k+c++rw++yl Eucgr.J01573.1.p 11 KGSWTEEEDVLLRSSVQRYGEGEWHRVPQRAGLNRCRKSCRLRWLNYL 58 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.9 | 6.3e-15 | 64 | 109 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ +E + +++++k+lG++ W++Ia +++ gRt++++k++w+++l Eucgr.J01573.1.p 64 RGKFQDDEVDMIIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 109 8999******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.229 | 6 | 58 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 8 | 60 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.24E-27 | 8 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-14 | 10 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-16 | 11 | 58 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.98E-9 | 13 | 58 | No hit | No description |
PROSITE profile | PS51294 | 24.216 | 59 | 113 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-24 | 61 | 112 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-14 | 63 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-13 | 64 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.43E-9 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence Send to blast |
MQKGSSFGLR KGSWTEEEDV LLRSSVQRYG EGEWHRVPQR AGLNRCRKSC RLRWLNYLKP 60 NIKRGKFQDD EVDMIIRLHK LLGNRWSLIA GRLPGRTAND VKNYWNTHLR KLMTCQGKPE 120 NEKPQDLVKV EVIRPRPRTI SKNFSSLGVE AYRELNESRE PRVHDVPPNR SPWIDDDFQL 180 RSETTEAWLD CWSGLSFDAE SIWDWPV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-22 | 2 | 111 | 18 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.J01573.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HM773023 | 5e-93 | HM773023.1 Syzygium malaccense MYB transcription factor (MYB) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010034473.1 | 1e-152 | PREDICTED: transcription factor MYB114 isoform X2 | ||||
Swissprot | Q9FNV9 | 5e-62 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A059ADG7 | 1e-151 | A0A059ADG7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010034473.1 | 1e-151 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66370.1 | 2e-64 | myb domain protein 113 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.J01573.1.p |
Entrez Gene | 104423714 |
Publications ? help Back to Top | |||
---|---|---|---|
|