PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.J01558.1.p | ||||||||
Common Name | EUGRSUZ_J01558 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 102aa MW: 11936.9 Da PI: 10.9579 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.8 | 2.2e-17 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll v+++G g W++++++ g++R++k+c++rw++yl Eucgr.J01558.1.p 11 KGSWTEEEDVLLRSSVQRYGEGEWHRVPQRAGLNRCRKSCRLRWLNYL 58 799********************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.549 | 6 | 62 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 8 | 60 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-14 | 10 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 11 | 58 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.64E-21 | 12 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.77E-10 | 13 | 58 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.1E-7 | 61 | 84 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MQKGSSFGLR KGSWTEEEDV LLRSSVQRYG EGEWHRVPQR AGLNRCRKSC RLRWLNYLKP 60 NIKRGKFQDD EVDMIIRLHK LLGNGRVHAK KRSHVKCICL F* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 93 | KKRSH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.J01558.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM773023 | 3e-62 | HM773023.1 Syzygium malaccense MYB transcription factor (MYB) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018719133.1 | 5e-61 | PREDICTED: transcription factor MYB114 | ||||
Swissprot | Q9FNV9 | 3e-39 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A059AEQ2 | 3e-68 | A0A059AEQ2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010034464.1 | 2e-55 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-41 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.J01558.1.p |
Publications ? help Back to Top | |||
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