PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J01501.1.p
Common NameEUGRSUZ_J01501, LOC104422106
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 312aa    MW: 33038.4 Da    PI: 7.7083
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J01501.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.56.9e-314105197
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +l+ll+a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+
  Eucgr.J01501.1.p   4 SCNGCRVLRKGCSESCSIRPCLqwiksPESQAHATVFLAKFYGRAGLLNLLNAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLC 96 
                       6******************************************************************************************** PP

            DUF260  89 qlkaelall 97 
                       q+++e++l 
  Eucgr.J01501.1.p  97 QAAVEAVLK 105
                       ***999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381554.3E-961303IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.6433109IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-244102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSESCS IRPCLQWIKS PESQAHATVF LAKFYGRAGL LNLLNAGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGVPIT PIASEAAASS  120
HAPPSKVYDI RHVSKDETAA AVADLHRVRA RCRFKRSLAK ARSSTSSASA AAAATELAPV  180
QDEPAKSSDD EPNRSTSHES SLSHQSEVIA AAAAASAEGD SKETLSAVSE ETAEPPLLFR  240
AAEREPDLAD RRPGGAEEIG LELTLGFEPV ARANHVVPVK KRRFEDCGAS SKMELGLDCS  300
AHLGGSPKSI L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J01501.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032636.10.0PREDICTED: LOB domain-containing protein 40
SwissprotQ9M8861e-105LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A059AE020.0A0A059AE02_EUCGR; Uncharacterized protein
STRINGXP_010032636.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.17e-80LOB domain-containing protein 41