PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J01244.1.p
Common NameEUGRSUZ_J01244
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 707aa    MW: 78860.1 Da    PI: 5.0164
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J01244.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS377.12.2e-1153327031374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL+ cA+av+ gd+  a +lL++++ +asp+gd mqR+a+yf+++L+arla+s+s++ykal +++ s   +++ l+a++l+  ++P++k+
  Eucgr.J01244.1.p 332 LRTLLTLCAQAVNMGDQGSAGELLKQIRRHASPTGDGMQRMAHYFANGLEARLAGSGSQIYKALMARPMS---VVDFLKAYHLLLAACPFMKL 421
                       5789****************************************************************99...******************** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       s++  N++Il+ ++++ ++Hi+Df+  +G+QWp L++ L+s p+gpp+l+iTg++ p++g   +e +eetg+rLa++A++++vpf+fn+ +ak
  Eucgr.J01244.1.p 422 SNFFSNKTILDVANKAAKLHIVDFGTLYGFQWPGLIEHLSSSPGGPPKLQITGIDLPQPGfkPAEIVEETGKRLASYAKTFNVPFKFNA-IAK 513
                       ***********************************************************99999*************************.7** PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       +++++++eeL+++++E l+Vn+++ +h++lde+v  es+rd vL+l+++++P+v+++  +   h+ + F+ rf eal +ysa+fd+lea++pr
  Eucgr.J01244.1.p 514 NWDTIKVEELNIQSDEILVVNCIFTIHHILDETVMAESPRDVVLNLIRKMNPDVFILGVKSGGHGVPFFASRFREALFHYSAIFDMLEATVPR 606
                       ********************************************************************************************* PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       ++ er  +E+e+ gr+++nv+aceg+er+er et++  + r  +aGF+++pl++++a+ ak  l+ ++ + +++ee+ ++l++gWk+r ++++
  Eucgr.J01244.1.p 607 DAPERLLLEQEVAGRKAMNVIACEGSERIERPETYKMSHVRNLRAGFRQLPLDKDMASLAKDRLKSYYHKDFEIEEDGQWLLQGWKGRIVYAL 699
                       ********************************************************************888********************** PP

              GRAS 371 SaWr 374
                       S Wr
  Eucgr.J01244.1.p 700 STWR 703
                       ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.234306683IPR005202Transcription factor GRAS
PfamPF035147.7E-113332703IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MDRPPDELNS FNDGYVLDDS DGAAFSIFPE DDLVSRLTID DMFNDFTYSH SYAPPLGANL  60
GKELAEDYDF GDEALKYINQ MLMEEDIEEK SIVCQKALAL EAAEKSFYEV IGERYPPAAD  120
QHPLPNQTNE SLCGSSAGAI NWVEWEPHCG SQEHAVHTTV SQSISSSIGQ SFDGVFVSIS  180
TTGHAESLAS DFNGNGDEAG ELLSFGNGIL VDPERGEFSI DEPSEEATSL VPNLENDENM  240
FFDLGQYRGK KNPLREDVNL EEGRMNKHSS VYTESTVRSE MFDIVLLNRK GSEAALRETL  300
RNVMKNGRLK APNERKARGK KQGRRKKDVV DLRTLLTLCA QAVNMGDQGS AGELLKQIRR  360
HASPTGDGMQ RMAHYFANGL EARLAGSGSQ IYKALMARPM SVVDFLKAYH LLLAACPFMK  420
LSNFFSNKTI LDVANKAAKL HIVDFGTLYG FQWPGLIEHL SSSPGGPPKL QITGIDLPQP  480
GFKPAEIVEE TGKRLASYAK TFNVPFKFNA IAKNWDTIKV EELNIQSDEI LVVNCIFTIH  540
HILDETVMAE SPRDVVLNLI RKMNPDVFIL GVKSGGHGVP FFASRFREAL FHYSAIFDML  600
EATVPRDAPE RLLLEQEVAG RKAMNVIACE GSERIERPET YKMSHVRNLR AGFRQLPLDK  660
DMASLAKDRL KSYYHKDFEI EEDGQWLLQG WKGRIVYALS TWRPDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-4733970426380Protein SCARECROW
5b3h_A4e-4733970425379Protein SCARECROW
5b3h_D4e-4733970425379Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315326KARGKKQGRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J01244.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032389.10.0PREDICTED: scarecrow-like protein 9
TrEMBLA0A059ADH90.0A0A059ADH9_EUCGR; Uncharacterized protein
STRINGXP_010032389.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-175SCARECROW-like 14