PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.J01242.1.p | ||||||||
Common Name | EUGRSUZ_J01242, LOC104421919 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 721aa MW: 80550.9 Da PI: 4.7183 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 367.1 | 2.4e-112 | 346 | 717 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++lL+ cA+av+ +d a +lL++++ +asp+gd mqR+a+yf+++L+arla+s+s+++kal +++ s +++l+a++l+ ++P++k+ Eucgr.J01242.1.p 346 LRTLLTLCAQAVTMDDRGSAGELLKQIRRHASPTGDGMQRMAHYFANGLEARLAGSGSQIFKALMARPRS---AVDVLKAYHLLLTICPFMKL 435 5789***************************************************************999...9******************* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 sh N++Il+ + ++ ++HiiDf+i +G+QWp L++ L+s p+gpp+lRiT+++ p++g e +eetg+rL ++A++++vpf+fn+ ++k Eucgr.J01242.1.p 436 SHYFSNKTILNVAREAPKLHIIDFGILYGFQWPGLIERLSSSPSGPPELRITAIDLPQPGfkPDEIVEETGRRLVSYAKTFNVPFKFNA-IVK 527 ***********************************************************9999999***********************.7** PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 ++++++eeL+++++E l+Vn++++ h++ld++v es+rd vL+l+k+++P+v++ + + +h+ + F+ rf eal ++sa+fd lea++pr Eucgr.J01242.1.p 528 GWDAIKVEELNIHSDEILVVNCIHRFHNILDDTVLAESPRDVVLNLIKKMNPDVFIQAVVNGNHGVPFFVSRFREALFHFSAVFDILEATVPR 620 ********************************************************************************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 ++ er +E+e+lg++++nv+aceg++r+er et+++ + r +aGF+++pl+++ ++ ak l+ ++ + +++ee+ ++l++gWk+r ++++ Eucgr.J01242.1.p 621 DDPERLLLEQEILGKQAMNVIACEGSDRIERPETYKSSHVRNLRAGFRQLPLDKDLVSLAKDKLKSCYHKDFEIEEDGQWLLQGWKGRIIYAL 713 ********************************************************************889********************** PP GRAS 371 SaWr 374 S Wr Eucgr.J01242.1.p 714 STWR 717 ***8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.066 | 320 | 697 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.1E-110 | 346 | 717 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 721 aa Download sequence Send to blast |
MDRPPDKLDN FIDGYVLVDG DDAAFSILRE DDLVSELTID DTFNDFTYSC TCAPHLGADL 60 GKEPAEDYDF SDAALKYINQ MLMEEDIEEK SVACHEASAI EAAEKSFYEV IGERYPPAAD 120 QHPSPNQTNE SSCGGSDSVI KLVESEPNYE SEEHTVLTTV SQSISSSVAQ SLDDVRVGIS 180 TAGHAESPVN AISLSELIGS ESVMQFKGNS EETRESLAFG NEILVDPERG EFSFNEQTEE 240 PTSLVPNEET DENMFANLGG NRGKKNPLQE DVNLEVGRMS KYLSVYTEST VRSEIFDMVL 300 LNPKESEATL REALRNMMQN GKSKVPNEGK ARGKKQGRRK RDVVDLRTLL TLCAQAVTMD 360 DRGSAGELLK QIRRHASPTG DGMQRMAHYF ANGLEARLAG SGSQIFKALM ARPRSAVDVL 420 KAYHLLLTIC PFMKLSHYFS NKTILNVARE APKLHIIDFG ILYGFQWPGL IERLSSSPSG 480 PPELRITAID LPQPGFKPDE IVEETGRRLV SYAKTFNVPF KFNAIVKGWD AIKVEELNIH 540 SDEILVVNCI HRFHNILDDT VLAESPRDVV LNLIKKMNPD VFIQAVVNGN HGVPFFVSRF 600 REALFHFSAV FDILEATVPR DDPERLLLEQ EILGKQAMNV IACEGSDRIE RPETYKSSHV 660 RNLRAGFRQL PLDKDLVSLA KDKLKSCYHK DFEIEEDGQW LLQGWKGRII YALSTWRPDC 720 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-46 | 353 | 718 | 26 | 380 | Protein SCARECROW |
5b3h_A | 3e-46 | 353 | 718 | 25 | 379 | Protein SCARECROW |
5b3h_D | 3e-46 | 353 | 718 | 25 | 379 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.J01242.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010032388.1 | 0.0 | PREDICTED: scarecrow-like protein 9 isoform X1 | ||||
TrEMBL | A0A059ACH2 | 0.0 | A0A059ACH2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010032388.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.J01242.1.p |
Entrez Gene | 104421919 |