PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.J01123.1.p | ||||||||
Common Name | EUGRSUZ_J01123, LOC104421817 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 24932.5 Da PI: 6.2477 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.2 | 1.2e-42 | 77 | 176 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ l+++ Eucgr.J01123.1.p 77 PCAACKILRRRCVDKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPEPQRADAVSSMVYEANARIRDPVYGCAGAICHLQKQVSDLQEQ 169 7******************************************************************************************** PP DUF260 94 lallkee 100 la++++e Eucgr.J01123.1.p 170 LAKTQAE 176 ***9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.087 | 76 | 177 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.7E-43 | 77 | 174 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MEMEYKARTT TIPAPVTIPT KVFFPYSTSS SSSSPPPQPP SSQSSSPTTP PPHPPPPPSS 60 LPITPLPPPP PPAVLSPCAA CKILRRRCVD KCVLAPYFPP TEPYKFTIAH RVFGASNIIK 120 FLQELPEPQR ADAVSSMVYE ANARIRDPVY GCAGAICHLQ KQVSDLQEQL AKTQAELVNL 180 ELQRVNLVAA CMEMAQSQEP NINFQQQLAD STGFLEDGSA SWESIYWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-42 | 69 | 179 | 3 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-42 | 69 | 179 | 3 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.J01123.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010032234.1 | 1e-165 | PREDICTED: LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 3e-73 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A059ACR7 | 1e-164 | A0A059ACR7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010032234.1 | 1e-165 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 8e-74 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.J01123.1.p |
Entrez Gene | 104421817 |