PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.J01038.1.p | ||||||||
Common Name | EUGRSUZ_J01038, LOC104421755 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 539aa MW: 60381.9 Da PI: 4.3846 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.6 | 2.8e-54 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 l+pGfrFhPtdeel+ +yLk+kv+gk+l++ ++i+evd+yk+ePwdLp k k+k+++ ewyfFs dkky +g+++nrat++gyWk+tgkd++ Eucgr.J01038.1.p 9 LAPGFRFHPTDEELIRYYLKRKVSGKPLRF-DAISEVDVYKCEPWDLPdKsKLKSRDLEWYFFSVLDKKYGNGSKTNRATENGYWKTTGKDRA 100 579*************************99.99**************95347777888*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +++vg+kktLv+++grap+g++t+Wvmheyrl Eucgr.J01038.1.p 101 IYH-YSRTVGMKKTLVYHNGRAPRGQRTNWVMHEYRL 136 ***.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.18E-62 | 8 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.81 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.9E-28 | 11 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 539 aa Download sequence Send to blast |
MGRDKGKSLA PGFRFHPTDE ELIRYYLKRK VSGKPLRFDA ISEVDVYKCE PWDLPDKSKL 60 KSRDLEWYFF SVLDKKYGNG SKTNRATENG YWKTTGKDRA IYHYSRTVGM KKTLVYHNGR 120 APRGQRTNWV MHEYRLTDEE LEKAGIPQDA FVLCRIFQKS GSGPKNGEQY GAPFIEEEWE 180 DDDVALFPDQ EQMVVVHDEY VEADDLDQSI EVGTEPGDAP VPLNFYHGET SQGTEHSNDL 240 NEDEQKPLID TNAIQASLQQ QDEQFFVLPE QYRTEMKAIE NGYIGQSDDN ANPVDANYLL 300 DEPYLDVAGD DYYLQTNDLA NLLGEDAADF DVEDYLTFFD ADDENLLPYE SSQPPPENLL 360 SDHALHAEHI NGENEEAPLA GNLPSESCSK DCASTSKPHL DSKDPESSIK YPFMKAASQM 420 LGSFPAPPAF AAEFPVKDAA LRLNSAAQPS SSVHVTAGMI RIRNMNLVGS GMDWSIGKNG 480 ELNIVLSFGM SQADISPTDS GLRSRKTPSV ASWTWCFLFF WIILLSVGVK VGTSIYSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-48 | 8 | 165 | 14 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00059 | PBM | Transfer from AT5G04410 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.J01038.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010032131.1 | 0.0 | PREDICTED: NAC domain-containing protein 78 | ||||
Swissprot | Q84K00 | 1e-169 | NAC78_ARATH; NAC domain-containing protein 78 | ||||
TrEMBL | A0A059ADS6 | 0.0 | A0A059ADS6_EUCGR; Uncharacterized protein | ||||
STRING | XP_010032131.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3192 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 1e-164 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.J01038.1.p |
Entrez Gene | 104421755 |