PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J00940.1.p
Common NameEUGRSUZ_J00940
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 233aa    MW: 26231.1 Da    PI: 10.0456
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J00940.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.62.1e-48191452128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       ppGfrFhPtdeel+v+yLk+kv+++ +++ e i+++d+y+++Pw+Lpkk+  +e ewyfFs+r++ky++g r+nra+ sgyWkatg dk++l+
  Eucgr.J00940.1.p  19 PPGFRFHPTDEELLVYYLKNKVASRLVPA-ELIADIDLYQYNPWELPKKAFFGEGEWYFFSPRNRKYPNGGRPNRAAGSGYWKATGIDKPILT 110
                       9*************************999.89***************87778999*************************************9 PP

               NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + +++ +g+kk Lvf+ gr pkg kt+W m+eyrl
  Eucgr.J00940.1.p 111 SgGTKSIGVKKALVFHIGRPPKGMKTEWSMDEYRL 145
                       967778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-5916172IPR003441NAC domain
PROSITE profilePS5100556.8318172IPR003441NAC domain
PfamPF023651.9E-2519145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDLWVDAAQP ARSFPAAFPP GFRFHPTDEE LLVYYLKNKV ASRLVPAELI ADIDLYQYNP  60
WELPKKAFFG EGEWYFFSPR NRKYPNGGRP NRAAGSGYWK ATGIDKPILT SGGTKSIGVK  120
KALVFHIGRP PKGMKTEWSM DEYRLIDATV RPPRSKRSMR LDDWVLCRVR QKEKVPRNAG  180
SHHGDFSSST KAAPSYPKKN GEALPVHTGL CKEVAMENPF QDCLVMASLL SGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-671717316166NO APICAL MERISTEM PROTEIN
1ut4_B9e-671717316166NO APICAL MERISTEM PROTEIN
1ut7_A9e-671717316166NO APICAL MERISTEM PROTEIN
1ut7_B9e-671717316166NO APICAL MERISTEM PROTEIN
3swm_A8e-671717319169NAC domain-containing protein 19
3swm_B8e-671717319169NAC domain-containing protein 19
3swm_C8e-671717319169NAC domain-containing protein 19
3swm_D8e-671717319169NAC domain-containing protein 19
3swp_A8e-671717319169NAC domain-containing protein 19
3swp_B8e-671717319169NAC domain-containing protein 19
3swp_C8e-671717319169NAC domain-containing protein 19
3swp_D8e-671717319169NAC domain-containing protein 19
4dul_A9e-671717316166NAC domain-containing protein 19
4dul_B9e-671717316166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. {ECO:0000250}.
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J00940.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032014.11e-175PREDICTED: NAC domain-containing protein 68
SwissprotA2YMR01e-71NAC10_ORYSI; NAC transcription factor ONAC010
SwissprotK4BNG75e-72NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLA0A059AC481e-173A0A059AC48_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010032014.11e-175(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1798467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-72NAC domain containing protein 2
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]