PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.J00923.1.p | ||||||||
Common Name | EUGRSUZ_J00923, LOC104421656 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ARF | ||||||||
Protein Properties | Length: 713aa MW: 77677.8 Da PI: 8.1411 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.5 | 6.3e-24 | 117 | 218 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + Eucgr.J00923.1.p 117 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVIAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--R 205 89****************************996555555..8************************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ l+v+++r+ Eucgr.J00923.1.p 206 AENGDLCVGIRRA 218 488999****997 PP | |||||||
2 | Auxin_resp | 118.7 | 4.7e-39 | 284 | 367 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a+++++FevvY+Prast+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+ Eucgr.J00923.1.p 284 AAALAASGQPFEVVYYPRASTPEFCVKASSVKAAMRIQWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPIRWPNSPWRLLQ 367 678899****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.9E-38 | 108 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.14E-29 | 114 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.44E-22 | 116 | 217 | No hit | No description |
Pfam | PF02362 | 3.3E-22 | 117 | 218 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-22 | 117 | 219 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.225 | 117 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.7E-34 | 284 | 367 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 19.316 | 600 | 680 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009743 | Biological Process | response to carbohydrate | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048589 | Biological Process | developmental growth | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 713 aa Download sequence Send to blast |
MTVLKEPERS LDPQLWHACA GGMVQMPPLN SRVFYFPQGH AEHASSAVDF AGSSGGVPPL 60 ILCRVSSVKF LADHESDEVF AKLRLVPLPN TELDFEDDRA LEAAAAGSDN PEKPASFAKT 120 LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQTVIAK DVHGETWKFR HIYRGTPRRH 180 LLTTGWSTFV NQKKLVAGDS IVFLRAENGD LCVGIRRAKR GIGGESQAAW SSGGGGSCVP 240 QFGGFSMLLR EEENKLMRNA ANAGCDGGFR GGKGRVRQES VIEAAALAAS GQPFEVVYYP 300 RASTPEFCVK ASSVKAAMRI QWCSGMRFKM AFETEDSSRI SWFMGTISSV QVADPIRWPN 360 SPWRLLQVTW DEPDLLQNVK RVSPWLVELV SNIPAIHMSP FSPPRKKLRL PHYPDFPLDG 420 NFLVPSFSGN LHGPTGLLCC LSDNAPAGIQ GARQAQFGIP LTDHHLNNRL RLGLLSSNLH 480 RFDPHSRSSN SITKDNTQGS ESLSCVLTMG NCSQSSEKSG DEKKHKFLLF GQPILTEQQI 540 SRGRSGGDVV SDVVSGKGST DGNTGKPKFL SDGVGSTLKQ AGAGFLWRHG FETSELGLET 600 GHCKVFMESE DVGRTLDLSI LGSYEELYRK LGNMFGIERS EMPSHVLYRD AAGTVKRTGD 660 EPFSDFMRTA KRLTIFMDSA GRSIGRTLLT GRRNAENGFD STTKAGPLST YA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-78 | 11 | 388 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.J00923.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010031986.1 | 0.0 | PREDICTED: auxin response factor 22 isoform X1 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A059ACB3 | 0.0 | A0A059ACB3_EUCGR; Auxin response factor | ||||
STRING | XP_010031986.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.J00923.1.p |
Entrez Gene | 104421656 |
Publications ? help Back to Top | |||
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