PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J00905.1.p

Common Name

EUGRSUZ_J009051, LOC104421640

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB_related

Protein Properties

Length: 550aa MW: 60795.3 Da PI: 6.4682

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J00905.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.6	3.7e-10	460	508	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 ++WT E +l+++v lG g+W++I r + k+Rt ++k++w+++ Eucgr.J00905.1.p 460 MPWTLTEVMKLIEGVSHLGVGRWSKIKRLLFsssKHRTSVDLKDKWRNL 508 69*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.3E-12	454	512	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.904	454	513	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-15	456	516	IPR009057	Homeodomain-like
SMART	SM00717	9.9E-10	458	511	IPR001005	SANT/Myb domain
Pfam	PF00249	2.8E-7	460	508	IPR001005	SANT/Myb domain
CDD	cd11660	1.18E-19	461	510	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence Send to blast
MLHAAAKQTS FAMDEHENIF ASGFAEVDKH VSFLTAFEDE DMGAEHSFLG PECSRDIAST 60 HLGLGTFDLP KCFSIDNISC AFDDDEMTVD NVAATVVAGE QTKTELFGEA LEPKGEKILH 120 EDKCCQPAAG QHFMDSEYMD DASNIICFPS EDSHLQGTLA LQSELMLLDG RACSTAAATE 180 STSCQNSVSL DHMTVRELQD AFHSMFGRET AVIDKQWLKR RILFGLHNNN ELDRPLNLTC 240 CGSISQEKED KSTVASGTES SENAFNSPKW MLDGGFKMDE KMKGSSSDSQ TNYSSGASES 300 DVSFHGKDEN EVGGLVTGKR VHKPPRRYIE ESSEFKSRSH PRRSSVSVKS PKNKVVDAKI 360 HKQCEEEVNE TAGSGNQIGS FDGACIQVPF GLPVEEEQAK GNTLCLRQDS DICPKTEHAA 420 IPSEISDLPC PSAKSQTIVK DERVIRSNMQ KGRRRRKHHM PWTLTEVMKL IEGVSHLGVG 480 RWSKIKRLLF SSSKHRTSVD LKDKWRNLVK ASCTQLRKKR KGLQVRKQLS HQAPESVLCR 540 VKELASSCA*

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence Send to blast

MLHAAAKQTS FAMDEHENIF ASGFAEVDKH VSFLTAFEDE DMGAEHSFLG PECSRDIAST  60
HLGLGTFDLP KCFSIDNISC AFDDDEMTVD NVAATVVAGE QTKTELFGEA LEPKGEKILH  120
EDKCCQPAAG QHFMDSEYMD DASNIICFPS EDSHLQGTLA LQSELMLLDG RACSTAAATE  180
STSCQNSVSL DHMTVRELQD AFHSMFGRET AVIDKQWLKR RILFGLHNNN ELDRPLNLTC  240
CGSISQEKED KSTVASGTES SENAFNSPKW MLDGGFKMDE KMKGSSSDSQ TNYSSGASES  300
DVSFHGKDEN EVGGLVTGKR VHKPPRRYIE ESSEFKSRSH PRRSSVSVKS PKNKVVDAKI  360
HKQCEEEVNE TAGSGNQIGS FDGACIQVPF GLPVEEEQAK GNTLCLRQDS DICPKTEHAA  420
IPSEISDLPC PSAKSQTIVK DERVIRSNMQ KGRRRRKHHM PWTLTEVMKL IEGVSHLGVG  480
RWSKIKRLLF SSSKHRTSVD LKDKWRNLVK ASCTQLRKKR KGLQVRKQLS HQAPESVLCR  540
VKELASSCA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J00905.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010031962.1	0.0	PREDICTED: uncharacterized protein LOC104421640 isoform X1
TrEMBL	A0A059ADA1	0.0	A0A059ADA1_EUCGR; Uncharacterized protein
STRING	XP_010031962.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	1e-26	TRF-like 6

Link Out ? help Back to Top
Phytozome	Eucgr.J00905.1.p
Entrez Gene	104421640