PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.J00892.1.p | ||||||||
Common Name | EUGRSUZ_J00892 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 322aa MW: 35812.9 Da PI: 8.1229 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.7 | 1.1e-12 | 53 | 95 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd ++ +++ G++ W+ Ia+ ++ gRt++++k++w++ Eucgr.J00892.1.p 53 GEFSDEEDRIIFSLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 95 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.577 | 1 | 46 | IPR017877 | Myb-like domain |
SMART | SM00717 | 21 | 13 | 48 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.58E-21 | 32 | 101 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-11 | 32 | 58 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.217 | 47 | 101 | IPR017930 | Myb domain |
SMART | SM00717 | 5.9E-13 | 51 | 99 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-11 | 53 | 95 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.22E-9 | 54 | 97 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 59 | 98 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EGLQAQRKAG LKRCGKSCRL RWLNYLRPNI KHGEFSDEED 60 RIIFSLFATI GSRWSIIAAQ LPGRTDNDIK NYWNTKLKKK LMGMIPPSQR KLMIPPFSSS 120 TPNNYPITPS SQLSSLPSSL YRDCTASFYN PPSNNNRPSI TNLEFSSSLP SSTTLLTDSS 180 SLFQAQEGGF LCPIQYDSSV KDINNNNHNN MLVFGSSERS DCSYGREMGI KQEQLDFRGY 240 IPNGFEGNNN VQRVESSYSN SGSCDNANHL SGCFGGNDNS VLDYDLEDVK RLISSNSSSS 300 NSLLFTDESN KIGDQRALYY F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-22 | 14 | 101 | 7 | 108 | B-MYB |
1mse_C | 2e-22 | 14 | 101 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-22 | 14 | 101 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.J00892.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021690615.1 | 5e-90 | transcription factor RAX2-like | ||||
TrEMBL | A0A059ACH1 | 0.0 | A0A059ACH1_EUCGR; Uncharacterized protein | ||||
STRING | cassava4.1_030463m | 6e-81 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 6e-59 | myb domain protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.J00892.1.p |