PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J00697.1.p

Common Name

EUGRSUZ_J00697

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

SRS

Protein Properties

Length: 355aa MW: 36748.4 Da PI: 8.0208

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J00697.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	216.2	7.4e-67	140	301	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssa 94 s ta+CqdCGnqakkdC+++RCRtCCksrgfdCathvkstWvpa++rrerq +++++++ + + +++ +k++r ++++++s+t++s++ Eucgr.J00697.1.p 140 SSTATCQDCGNQAKKDCSYRRCRTCCKSRGFDCATHVKSTWVPASRRRERQLMTSTTTAGGTGGSvSTSGAKKPRLV-GSQTTTTSHTSTSNT 231 67899*******************************************999998888777666377777888865.88999999*** PP DUF702 95 eskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++++tss lP +v+++avf+cvrv+svd++e+e+aYq++v+igGhvfkG+Lyd+G+ee Eucgr.J00697.1.p 232 TPPRSFDTSSsrqdasfkesLPGQVRAPAVFKCVRVTSVDEEEDEYAYQAVVKIGGHVFKGFLYDRGVEE 301 ****999******************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.8E-61	142	300	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.6E-27	144	186	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	9.8E-28	252	299	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MGMVGLRDVF VVAPATSFHH PTSHHHHHHH HHNDQVIADS SNGSNNSAAT ALGMGVGVGV 60 IPLLTAGPCL GPPQNAAEGD NGNLTARGGG RAGAAAEFQL WQNQQSSHHY LKKSAPILDH 120 GNSGALIQSG GGGGIGASSS STATCQDCGN QAKKDCSYRR CRTCCKSRGF DCATHVKSTW 180 VPASRRRERQ LMTSTTTAGG TGGSVSTSGA KKPRLVGSQT TTTSHTSTSN TTPPRSFDTS 240 SSRQDASFKE SLPGQVRAPA VFKCVRVTSV DEEEDEYAYQ AVVKIGGHVF KGFLYDRGVE 300 EREDIMNLSD LHLGGGGGGD RNGASSSSPI MDPSDVYASG GGLLGGSSYG NPIN*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MGMVGLRDVF VVAPATSFHH PTSHHHHHHH HHNDQVIADS SNGSNNSAAT ALGMGVGVGV  60
IPLLTAGPCL GPPQNAAEGD NGNLTARGGG RAGAAAEFQL WQNQQSSHHY LKKSAPILDH  120
GNSGALIQSG GGGGIGASSS STATCQDCGN QAKKDCSYRR CRTCCKSRGF DCATHVKSTW  180
VPASRRRERQ LMTSTTTAGG TGGSVSTSGA KKPRLVGSQT TTTSHTSTSN TTPPRSFDTS  240
SSRQDASFKE SLPGQVRAPA VFKCVRVTSV DEEEDEYAYQ AVVKIGGHVF KGFLYDRGVE  300
EREDIMNLSD LHLGGGGGGD RNGASSSSPI MDPSDVYASG GGLLGGSSYG NPIN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J00697.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018719986.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	4e-94	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A059AB82	0.0	A0A059AB82_EUCGR; Uncharacterized protein
STRING	XP_010034259.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5883	26	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	1e-79	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Eucgr.J00697.1.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]