PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.J00664.1.p | ||||||||
Common Name | EUGRSUZ_J00664 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NF-YC | ||||||||
Protein Properties | Length: 265aa MW: 28731.3 Da PI: 4.2626 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 37.9 | 3.9e-12 | 1 | 69 | 30 | 98 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +P l+ska elf+ +l r++ + + +tl+ ++++v+ ++fdfl +iv + Eucgr.J00664.1.p 1 MQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYDITLKRGAKTLNSLHLKQCVQTFNVFDFLSEIVSK 69 899*************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 4.0E-12 | 1 | 54 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 8.7E-18 | 1 | 68 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.03E-18 | 1 | 71 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MQADEDVGKI AMAVPLLVSK ALELFLQDLC DRTYDITLKR GAKTLNSLHL KQCVQTFNVF 60 DFLSEIVSKV PDLGGSDTAG DDRSAAKRRK MVDDGENDTD DESKRSRMND TGHTGSAGRG 120 KGRGRGRGRG RGGRASEGDA TVQNEKFEVD GDVPQQDNLN QDLEGTENGD HLNESKDSIP 180 TPRSAEPPVR NFDLNVDLDE NGDSKSILAS GPTSISAAPD AGFKHEEYPG WSLSEVEKMA 240 IDPIQLANLN RGMDEDDEDY DEEG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 1e-14 | 1 | 55 | 21 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 131 | RGRGRGRGRG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.J00664.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010031686.1 | 0.0 | PREDICTED: dr1-associated corepressor | ||||
TrEMBL | A0A059ABE2 | 0.0 | A0A059ABE2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010031686.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13968 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 3e-55 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.J00664.1.p |