PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.J00587.4.p | ||||||||
Common Name | EUGRSUZ_J00587 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | YABBY | ||||||||
Protein Properties | Length: 184aa MW: 20238.7 Da PI: 10.8936 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 190 | 1.2e-58 | 16 | 155 | 22 | 170 |
YABBY 22 lavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvpp 114 + vsvPs+sl+++vtvrCGhC +llsvn+a a+q + + +++ e++ + + +s ++++s++ ss+ e + e+pr+ p Eucgr.J00587.4.p 16 MQVSVPSSSLYTMVTVRCGHCGNLLSVNMAGAVQSAPLPDT----SQQPSSENMARGSGSSSS-SRPNNNTSNKFSSF---EPIEAEAPRMTP 100 679******************************99999986....333344444433333333.33334444444442...456789999999 PP YABBY 115 virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Eucgr.J00587.4.p 101 -IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 155 .9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.5E-58 | 16 | 155 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.09E-8 | 96 | 148 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.5E-5 | 103 | 149 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MGFLVFTRRK NKRRSMQVSV PSSSLYTMVT VRCGHCGNLL SVNMAGAVQS APLPDTSQQP 60 SSENMARGSG SSSSSRPNNN TSNKFSSFEP IEAEAPRMTP IRPPEKRQRV PSAYNRFIKE 120 EIQRIKASNP DISHREAFST AAKNWAHFPH IHFGLKLDGN KQGKADQAIA GDHQGTHKSH 180 GFY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.J00587.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ694015 | 2e-61 | FJ694015.1 Dimocarpus longan YAB2-2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010031585.1 | 1e-122 | PREDICTED: putative axial regulator YABBY 2 isoform X2 | ||||
Swissprot | Q9XFB0 | 5e-67 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A059AAW8 | 1e-134 | A0A059AAW8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010031584.1 | 1e-107 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 5e-64 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.J00587.4.p |
Publications ? help Back to Top | |||
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