PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J00531.1.p

Common Name

EUGRSUZ_J00531, LOC104421329

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 421aa MW: 47138.7 Da PI: 4.9651

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J00531.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.1	3.6e-49	31	157	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 + pGfrF+Ptdeel+++yL+kk++g + ++ evi+ev+i+++ePwdLp k++ ++++ew+fFs r +ky++g++++rat+ gyWkatgk+++v Eucgr.J00531.1.p 31 MFPGFRFSPTDEELISYYLRKKLDGCEERV-EVIAEVEICRHEPWDLPaKSIIKSDNEWFFFSARGRKYPNGTQSRRATELGYWKATGKERNV 122 579**********************999.99***********767777899********************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +++++g+k+tLvf+ grapkge+t+W+mhey + Eucgr.J00531.1.p 123 KA-GSRVIGTKRTLVFHLGRAPKGERTEWIMHEYCM 157 9.9*****************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.32E-54	25	172	IPR003441	NAC domain
PROSITE profile	PS51005	52.815	31	173	IPR003441	NAC domain
Pfam	PF02365	7.4E-25	33	156	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071333	Biological Process	cellular response to glucose stimulus
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MEGGEREGER RAEMAGPSSR EPQITMAASS MFPGFRFSPT DEELISYYLR KKLDGCEERV 60 EVIAEVEICR HEPWDLPAKS IIKSDNEWFF FSARGRKYPN GTQSRRATEL GYWKATGKER 120 NVKAGSRVIG TKRTLVFHLG RAPKGERTEW IMHEYCMDGK SQDSPVICRL RRNTEFRINE 180 GTDQASPSQR ELSSVDDRNN VTSKGGIEGI TLSEAGEGFA RRCPSSYDSH SVEQTDSASE 240 SNQNLLNEGT MTESSIHQKD PEDDEEDFFA DILKDDIIKL DESAVSPAPP PLPMVSRQLE 300 AERRSQESII ASLLQVLNFP TEPGQRIDDP RAPEQAITSA LDGLELNKEY PADKDNKPSD 360 EQSQTCFFTT IFSGKTFGRR LSAAVLAIAV LAGLLVLLLG RYPRAKTVAR DFGFYVNFWK 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MEGGEREGER RAEMAGPSSR EPQITMAASS MFPGFRFSPT DEELISYYLR KKLDGCEERV  60
EVIAEVEICR HEPWDLPAKS IIKSDNEWFF FSARGRKYPN GTQSRRATEL GYWKATGKER  120
NVKAGSRVIG TKRTLVFHLG RAPKGERTEW IMHEYCMDGK SQDSPVICRL RRNTEFRINE  180
GTDQASPSQR ELSSVDDRNN VTSKGGIEGI TLSEAGEGFA RRCPSSYDSH SVEQTDSASE  240
SNQNLLNEGT MTESSIHQKD PEDDEEDFFA DILKDDIIKL DESAVSPAPP PLPMVSRQLE  300
AERRSQESII ASLLQVLNFP TEPGQRIDDP RAPEQAITSA LDGLELNKEY PADKDNKPSD  360
EQSQTCFFTT IFSGKTFGRR LSAAVLAIAV LAGLLVLLLG RYPRAKTVAR DFGFYVNFWK  420
*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-39	30	172	16	164	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-39	30	172	16	164	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-39	30	172	16	164	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-39	30	172	16	164	NO APICAL MERISTEM PROTEIN
3swm_A	2e-39	30	172	19	167	NAC domain-containing protein 19
3swm_B	2e-39	30	172	19	167	NAC domain-containing protein 19
3swm_C	2e-39	30	172	19	167	NAC domain-containing protein 19
3swm_D	2e-39	30	172	19	167	NAC domain-containing protein 19
3swp_A	2e-39	30	172	19	167	NAC domain-containing protein 19
3swp_B	2e-39	30	172	19	167	NAC domain-containing protein 19
3swp_C	2e-39	30	172	19	167	NAC domain-containing protein 19
3swp_D	2e-39	30	172	19	167	NAC domain-containing protein 19
4dul_A	2e-39	30	172	16	164	NAC domain-containing protein 19
4dul_B	2e-39	30	172	16	164	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J00531.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010031543.1	0.0	PREDICTED: NAC domain-containing protein 60 isoform X2
TrEMBL	A0A059AB59	0.0	A0A059AB59_EUCGR; Uncharacterized protein
STRING	XP_010031542.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4309	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27300.1	5e-80	NTM1-like 8

Link Out ? help Back to Top
Phytozome	Eucgr.J00531.1.p
Entrez Gene	104421329