PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.J00520.1.p | ||||||||
Common Name | EUGRSUZ_J00520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 240aa MW: 27035.5 Da PI: 6.2947 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 133.6 | 1.4e-41 | 5 | 136 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 p GfrF Pt+eel+++yL+k++eg+ +l ++i+ +diy +ePw+Lp+ +++++k+w+fF++ ++++a+g r++r+t+ gyWkatg+ Eucgr.J00520.1.p 5 PTGFRFYPTEEELISFYLHKQLEGSLqDRLLRIIPVLDIYATEPWNLPElsgeLCREDKKQWFFFAPMQEREARGGRPSRSTAMGYWKATGSP 97 89*********************99845567789*************9656754455778********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s++++++g+kk+++fy g+ap+g+kt+W ++eyr+ Eucgr.J00520.1.p 98 GYIYSSDNKVIGMKKSMIFYVGKAPTGTKTKWKLNEYRA 136 *************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-44 | 3 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.613 | 4 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-20 | 5 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MEDHPTGFRF YPTEEELISF YLHKQLEGSL QDRLLRIIPV LDIYATEPWN LPELSGELCR 60 EDKKQWFFFA PMQEREARGG RPSRSTAMGY WKATGSPGYI YSSDNKVIGM KKSMIFYVGK 120 APTGTKTKWK LNEYRAAEII SPPNSNSASS SMPKFRLRQE FALCRVYIVS GSSRAFDRRP 180 PELMAGETIL GGHGGGTSGG SASSSRPVVE NYAGISSDME TTSMDIEEPI WDWEQLNWF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-35 | 5 | 174 | 18 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-35 | 5 | 174 | 18 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-35 | 5 | 174 | 18 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-35 | 5 | 174 | 18 | 170 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-35 | 5 | 174 | 18 | 170 | NAC domain-containing protein 19 |
4dul_B | 6e-35 | 5 | 174 | 18 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.J00520.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010034225.1 | 1e-178 | PREDICTED: NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 7e-87 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A059A9U7 | 1e-177 | A0A059A9U7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010034225.1 | 1e-178 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 9e-87 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.J00520.1.p |
Publications ? help Back to Top | |||
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