PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.J00518.1.p

Common Name

EUGRSUZ_J00518, LOC104421317

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 240aa MW: 26979.3 Da PI: 6.6312

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.J00518.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	130.6	1.1e-40	5	136	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 p GfrF Pt+eel+++yL++++eg+ +l ++i+ +diy +ePw+Lp+ +++++++w+fF++ ++++a+g r++r+t+ gyWkatg+ Eucgr.J00518.1.p 5 PTGFRFYPTEEELISFYLHNQLEGSLqDQLRRIIPVLDIYATEPWNLPElsgeLCREDKEQWFFFAPMQEREARGGRPSRSTAVGYWKATGSP 97 89*******************99834555669999******9656654455777***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s++++++g+kk++vfy g+ap+g+kt+W +++yr+ Eucgr.J00518.1.p 98 GYIHSSDNKVIGIKKSMVFYVGKAPTGTKTKWKLNDYRA 136 ***********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-42	3	167	IPR003441	NAC domain
PROSITE profile	PS51005	44.353	4	169	IPR003441	NAC domain
Pfam	PF02365	5.6E-20	5	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MEDHPTGFRF YPTEEELISF YLHNQLEGSL QDQLRRIIPV LDIYATEPWN LPELSGELCR 60 EDKEQWFFFA PMQEREARGG RPSRSTAVGY WKATGSPGYI HSSDNKVIGI KKSMVFYVGK 120 APTGTKTKWK LNDYRAAHII SPPYSNCASS SMPKFRLRHE FALCRVYVVS GSSRAFDRRP 180 LELVAGETVA GGHGGSTGHR LASSSRPVIE NNAGISGDGE TTGMEIEEPI WDWEQLNWF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-32	5	174	18	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-32	5	174	18	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-32	5	174	18	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-32	5	174	18	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-32	5	174	21	173	NAC domain-containing protein 19
3swm_B	2e-32	5	174	21	173	NAC domain-containing protein 19
3swm_C	2e-32	5	174	21	173	NAC domain-containing protein 19
3swm_D	2e-32	5	174	21	173	NAC domain-containing protein 19
3swp_A	2e-32	5	174	21	173	NAC domain-containing protein 19
3swp_B	2e-32	5	174	21	173	NAC domain-containing protein 19
3swp_C	2e-32	5	174	21	173	NAC domain-containing protein 19
3swp_D	2e-32	5	174	21	173	NAC domain-containing protein 19
4dul_A	2e-32	5	174	18	170	NAC domain-containing protein 19
4dul_B	2e-32	5	174	18	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.J00518.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010031533.1	1e-180	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	6e-86	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A059ABX6	1e-178	A0A059ABX6_EUCGR; Uncharacterized protein
STRING	XP_010031533.1	1e-179	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-88	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Eucgr.J00518.1.p
Entrez Gene	104421317

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]