PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.J00349.1.p | ||||||||
Common Name | EUGRSUZ_J00349, LOC104421203 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 300aa MW: 31513.8 Da PI: 6.9631 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.4 | 3.2e-08 | 13 | 58 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +W++e d+ + +a + + W+++a+ ++ g+tl+++k+++ + Eucgr.J00349.1.p 13 SWSKEQDKAFENALATHFEVspdWWEKVASDVP-GKTLEEIKLHYED 58 7****************7448889*********.***********76 PP | |||||||
2 | Myb_DNA-binding | 43.8 | 6e-14 | 122 | 166 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky Eucgr.J00349.1.p 122 AWTEEEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166 6*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.795 | 9 | 64 | IPR017884 | SANT domain |
SMART | SM00717 | 1.4E-5 | 10 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.18E-8 | 12 | 67 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.4E-4 | 13 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.88E-7 | 13 | 60 | No hit | No description |
Pfam | PF00249 | 1.2E-5 | 13 | 59 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.333 | 114 | 171 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.45E-17 | 117 | 172 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.6E-11 | 119 | 169 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.8E-17 | 119 | 169 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 2.41E-10 | 122 | 167 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-11 | 122 | 165 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.1E-12 | 122 | 166 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MTVDEAVSPS CSSWSKEQDK AFENALATHF EVSPDWWEKV ASDVPGKTLE EIKLHYEDLV 60 EDVNRIEAGR VPLPSYSSAC SDGSASNLGE EESGKKGGGG SGESNQGGKG SRSDQERRKG 120 IAWTEEEHRL FLLGLDKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL SSVNKDRRRS 180 SIHDITTVGS GDLSAPQGPI TGQNQTDGSA GGVSSGKSNK QSPQSPAVTS GVAVSGPPPS 240 IGQPVGGPFV SAVGTPVNLS TAPHMAYGVR GQVQGTVVPG APINMGSVTY PMPHASAHR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-15 | 14 | 78 | 11 | 75 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.J00349.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010031381.1 | 0.0 | PREDICTED: transcription factor DIVARICATA | ||||
Swissprot | Q9FNN6 | 1e-111 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A059ABA1 | 0.0 | A0A059ABA1_EUCGR; Uncharacterized protein | ||||
STRING | XP_010031380.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3556 | 28 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-100 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.J00349.1.p |
Entrez Gene | 104421203 |
Publications ? help Back to Top | |||
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