PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.J00271.1.p | ||||||||
Common Name | EUGRSUZ_J00271, LOC104421142 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 233aa MW: 26564.6 Da PI: 6.6333 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.7e-15 | 97 | 142 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+ l++ + + +G+g+W++I+r++ ++Rt+ q+ s+ qk+ Eucgr.J00271.1.p 97 NPWTEEEHRLFLLGLQTYGKGDWRSISRHFVLTRTPTQVASHAQKF 142 69******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0024 | 4 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.15E-9 | 7 | 59 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 5.947 | 8 | 53 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 18.098 | 91 | 147 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-16 | 93 | 146 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-15 | 94 | 146 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.2E-12 | 95 | 145 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-12 | 95 | 138 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-12 | 97 | 141 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.75E-11 | 98 | 142 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MYGRAAEWSR YEDKVFEHAL VAVAEDSPDR WQLIGNRLNR SASQVFEHYQ RLVEDIDAIE 60 SGRVEPPSYR DDHPASCGQI AFETKPRIKE AEKKKGNPWT EEEHRLFLLG LQTYGKGDWR 120 SISRHFVLTR TPTQVASHAQ KFYMRQMSLG KKERKRNSIH DITTVDTPPV PASVNDSFNP 180 PQAGNAQDDP SYDYPKANNF QQMQPCQPAP FMNQLLDQGG GSIGYENLSY FL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.J00271.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010031294.1 | 1e-177 | PREDICTED: transcription factor DIVARICATA | ||||
TrEMBL | A0A059A8Y9 | 1e-175 | A0A059A8Y9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010031294.1 | 1e-176 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5127 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 6e-62 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.J00271.1.p |
Entrez Gene | 104421142 |