PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.J00202.1.p
Common NameEUGRSUZ_J00202, LOC104421070
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 660aa    MW: 71734.7 Da    PI: 7.3632
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.J00202.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-07272292526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C+ f++ G C +Gd C +aHg
  Eucgr.J00202.1.p 272 PCPEFRK-GSCVRGDACEYAHG 292
                       8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.3E-1731179IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.54E-1532155IPR020683Ankyrin repeat-containing domain
PfamPF127961.7E-869146IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.80477176IPR020683Ankyrin repeat-containing domain
SMARTSM002480.2877107IPR002110Ankyrin repeat
CDDcd002043.68E-1279175No hitNo description
PROSITE profilePS5008810.633112147IPR002110Ankyrin repeat
SMARTSM002480.043112144IPR002110Ankyrin repeat
PROSITE profilePS5010313.028267294IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5267293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4272293IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4272292IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.672302326IPR000571Zinc finger, CCCH-type
SMARTSM0035651302325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MCNGSSKGKL FPSSMGMEGE FHNKDGEAPR KCSALLELAA SDDLSSFKSE VEEKGCDVDE  60
ASFWYGRRIG SKKMGFEERT PLMISALFGS TKVLKYIIET ARADVNRSCG SDKVAALHCA  120
AAGGSSSSLE IVKLLIEASA DINSVDGNGN RPLDVLAPAG KSRCNSRNKF VRSLLKGENY  180
VVEGDQSFDI EGEEKLVALP KEGGEKKEYP VDVSLPDINN GFYSTDEFRM YAFKVKPCSR  240
AYSHDWTECP FVHPGENARR RDPRKYPYSC VPCPEFRKGS CVRGDACEYA HGVFESWLHP  300
AQYRTRLCKD ETGCTRKVCF FAHKSEELRP VYASTGSAMP SPKSFSANAL DMTTLSPLSL  360
NSPSLPLPAT STPPMSPLAA SSSPKGMNLW HNKINLTPPS LQLPGSRLKT AMSARDFDFE  420
LEFLGLEKQA SQRQQLIEEI SRLSSPSHMW NSEFGRTAEL KPTNLDDAFG SLDTSLLSPL  480
QGSSMKTSTP TQLQSPTGLK ISNLNQLRAS YPSSSLSSSP VRKTSSFGFD SSSAVAAAVM  540
NSRSAAMTKR SQSFIDRGAV GQRSGLIGPA NSPPRMSNLS DWGSPDGKLD WGVQGDELNK  600
LRKSASFGFR NNSMANPNNV ASPSADEPDV SWVGSLVKDV APPEGYPQYL YIEQEQMVA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.J00202.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031206.10.0PREDICTED: zinc finger CCCH domain-containing protein 29 isoform X1
RefseqXP_010031207.10.0PREDICTED: zinc finger CCCH domain-containing protein 29 isoform X2
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A059A9U10.0A0A059A9U1_EUCGR; Uncharacterized protein
STRINGXP_010031206.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-178C3H family protein