PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.J00189.1.p | ||||||||
Common Name | EUGRSUZ_J00189 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 211aa MW: 23025.8 Da PI: 8.3575 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.9 | 2e-12 | 2 | 34 | 14 | 47 |
HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++v+q+G+++W++I+ ++ gR++k+c++rw + Eucgr.J00189.1.p 2 KLVEQHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 34 79*****************.***********985 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.4e-17 | 43 | 85 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed +v+a+k +G++ W+tIar ++ gRt++ +k++w++ Eucgr.J00189.1.p 43 SFTPLEDATIVEAHKVHGNK-WATIARLLP-GRTDNAIKNHWNST 85 69******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-17 | 1 | 41 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.903 | 1 | 35 | IPR017930 | Myb domain |
CDD | cd00167 | 1.26E-9 | 2 | 33 | No hit | No description |
Pfam | PF00249 | 3.1E-11 | 2 | 34 | IPR001005 | SANT/Myb domain |
SMART | SM00717 | 0.17 | 2 | 37 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.41E-24 | 15 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.019 | 36 | 90 | IPR017930 | Myb domain |
SMART | SM00717 | 8.6E-14 | 40 | 88 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-22 | 42 | 89 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.8E-14 | 43 | 85 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.05E-11 | 43 | 86 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 211 aa Download sequence Send to blast |
MKLVEQHGPR NWSLISTGIP GRSGKSCRLR WCNQLSPTVQ HRSFTPLEDA TIVEAHKVHG 60 NKWATIARLL PGRTDNAIKN HWNSTLRRKR PGEQSSMSSE SNSEKHPGRD NTAAESETDL 120 EIKRQCLRVL PDENSRDGEV RPKGPRTSLT LSPPGGGVVA ALEDDKAAPN QADGDQDPAS 180 TRSGDAKVAA ATAAMDDSCL VMIMKRMIAE E |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-34 | 1 | 89 | 16 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 3e-33 | 1 | 89 | 70 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-33 | 1 | 89 | 70 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 6e-34 | 1 | 89 | 16 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 6e-34 | 1 | 89 | 16 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.J00189.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC770027 | 4e-38 | KC770027.1 Pyrus pyrifolia microsatellite TXY079 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010031187.1 | 1e-154 | PREDICTED: myb-related protein A | ||||
TrEMBL | A0A059A9S4 | 1e-154 | A0A059A9S4_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010031187.1 | 1e-154 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM677 | 28 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37260.1 | 2e-46 | myb domain protein 73 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.J00189.1.p |