PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I02488.1.p
Common NameEUGRSUZ_I02488, LOC104419787
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TALE
Protein Properties Length: 816aa    MW: 87682.3 Da    PI: 7.3541
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I02488.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.32.9e-095976341954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Eucgr.I02488.1.p 597 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 634
                       664459******************************88 PP
2BELL119.81.2e-38457528172
              BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       +r+e+q++k+kLls+l+eV++rY++y+eq+q+v++ F+ v+g+g+a pYt+lA+ka+SrhFrcLkdaia q+
  Eucgr.I02488.1.p 457 DRMEHQRRKVKLLSMLDEVERRYNHYCEQMQMVVNMFDLVMGYGAAVPYTALAQKAMSRHFRCLKDAIAAQL 528
                       689******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-81379526IPR006563POX domain
PfamPF075264.5E-53384525IPR006563POX domain
PROSITE profilePS5007112.568575638IPR001356Homeobox domain
CDDcd000864.49E-13578639No hitNo description
SMARTSM003891.2E-9578642IPR001356Homeobox domain
SuperFamilySSF466893.81E-17580645IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-28581644IPR009057Homeodomain-like
PfamPF059204.2E-18595634IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MGIATPPLPP ISSHTKTHHH HSIAISNPTK SMSQDYHHPS IFAFSNNGFE RPDVAAASAA  60
SDQEQQHHVA QQICRDKLRV QGFDQPPPPQ LVGMEEEPGG LPAYETAGML SEMFNFPPGG  120
AAAAELLEQP MASGYRAARP SLPTSEWYGS KNPGVYRRGE SNMSQQHHHA HHHHQQQQQN  180
QISNINAESA AAMQLFLMNP QARSPSPPTP HHHHHHPPPT SSSTLQMLLP NPSPPPSLQG  240
FHVSGSGSAA PNYGTGMIPP AQFTWVPDGG AATAAQLNNP SEISGAAVVE GQGLSLSLSS  300
SLQHLEAAKA EELRMGDSGL LFFNQAAGGG SANSSASASA VAASVQYHHQ FKNLGVHNLQ  360
SHHHQVHVGY GSSPSSSSLG VVNVLRNSRY LKAAQELLEE FCSVGRGHFK KGKFGRNTSS  420
SNPSSNPSNN NTSSASAVGG GASSSSSKDV PPLSAADRME HQRRKVKLLS MLDEVERRYN  480
HYCEQMQMVV NMFDLVMGYG AAVPYTALAQ KAMSRHFRCL KDAIAAQLKH SCELLGEKDG  540
AGSSGITKGE TPRLKLLDQS LRQQRAFHQM GMMEQEAWRP QRGLPERSVN ILRAWLFEHF  600
LHPYPSDADK HLLARQTGLS RNQVSNWFIN ARVRLWKPMV EEMYQQESKE GDEDDDHQAE  660
RSESSRNNLS TSGHAQTPTP SSFTPPPINN NTNSNNASTP TRRSEINAPE SDPSLTPAIN  720
RHPFSETQAT TLLQATTAMI SSAVQVAGPA HIDDPCRRSI GGSTGLGGAT DIGSALIRFG  780
TAAAATGDVS LTLGLRHAGN VPEKSSFSVT DLGGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16584642563Homeobox protein Meis2
3k2a_B2e-16584642563Homeobox protein Meis2
4xrm_A2e-16584642563Homeobox protein Meis2
4xrm_B2e-16584642563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I02488.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029856.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_010029858.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_010029859.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_018718485.10.0PREDICTED: BEL1-like homeodomain protein 4
SwissprotQ9SW801e-176BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A059AT020.0A0A059AT02_EUCGR; Uncharacterized protein
STRINGXP_010029855.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-146BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]