PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.I02222.2.p

Common Name

EUGRSUZ_I02222

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

WOX

Protein Properties

Length: 313aa MW: 35310 Da PI: 6.7347

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.I02222.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.3	1.9e-21	130	190	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F++ n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Eucgr.I02222.2.p 130 RQRWTPTPLQLQILERIFNEgNGTPSKQKIKEITTELsqhgQISETNVYNWFQNRRARSKR 190 89***************99************************************97 PP
2	Wus_type_Homeobox	101.2	7.4e-33	129	191	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ar+RWtPtp Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++k Eucgr.I02222.2.p 129 ARQRWTPTPLQLQILERIFNEGNGTPSKQKIKEITTELSQHGQISETNVYNWFQNRRARSKRK 191 789***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.9E-18	125	195	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.143	126	191	IPR001356	Homeobox domain
SMART	SM00389	3.1E-14	128	195	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.98E-19	129	194	IPR009057	Homeodomain-like
CDD	cd00086	3.01E-14	130	192	No hit	No description
Pfam	PF00046	3.4E-19	130	190	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MEWEKQEQHH PHHHHHPHHH AHQQQQHHQQ PPQQQQQAKE AQQQQQQQGG EGMGNGTAAG 60 NGGGVLYVKV MTDEQLETLR KQIAVYASIC EQLVEMHKNL TAQQDLAGVR LGNLYCDPLM 120 TTGGHKITAR QRWTPTPLQL QILERIFNEG NGTPSKQKIK EITTELSQHG QISETNVYNW 180 FQNRRARSKR KMQNATGNNT ESEAEAEVES PKEMKTKPEI FQSQQNPVSR NEDLCFQSPE 240 ISSDLHFADS QTKVESMVYP DGSLRSRNRN LGQLSFYDAM MSNSGNEHLG GKMEVPGAYG 300 LYHSAEDFGM SG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.I02222.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF953929	0.0	KF953929.1 Eucalyptus grandis cultivar EG5 WOX13.2 protein (WOX13.2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001289667.1	0.0	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	6e-91	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A059ARN9	0.0	A0A059ARN9_EUCGR; Uncharacterized protein
STRING	XP_010029579.1	1e-177	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-90	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Eucgr.I02222.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]