PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I02155.1.p
Common NameEUGRSUZ_I02155
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 384aa    MW: 42355.1 Da    PI: 4.4125
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I02155.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-19112161255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Eucgr.I02155.1.p 112 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 161
                       69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.99E-32112171No hitNo description
PROSITE profilePS5103224.092112169IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-22112170IPR016177DNA-binding domain
SMARTSM003809.9E-38112175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-32112170IPR001471AP2/ERF domain
PRINTSPR003671.1E-11113124IPR001471AP2/ERF domain
PfamPF008478.7E-12113161IPR001471AP2/ERF domain
PRINTSPR003671.1E-11135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
QCVGAPSSPT SSRRLTSDFL WPDLKRSAGK QSRRPARSEV VDVVDDDFEA DFQGFKDESD  60
VEDDFDDEVE VDVKPFAFSA AEPRYSKGSS TTKSVEYNGQ AEKSAKRKRK NQYRGIRQRP  120
WGKWAAEIRD PRKGVRVWLG TFNTAEEAAR AYDAEARRIR GKKAKVNFPD DSSSASSKRS  180
VKSNVQKLPK TTTNNVQPNL NQNFNYANSS DDDIYSSMGF VEEKPPTNQF YMDALNAQGV  240
SGMNSLSPAD SAPLYFNSDQ GSNSFECSDF GWGENGPRTP DVSSVLSATL EVDESQFEDA  300
NPRKKIRSAS DDVSEEENTA AKTFSEELSA FESDMKFFQM PFVDGGWDPS VEALLGGEAT  360
QDGGNAVDLW SFDDLAPMMG GVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-201111771380Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I02155.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029503.20.0PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor RAP2-12
TrEMBLA0A059AR730.0A0A059AR73_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010029503.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.32e-62related to AP2 2