PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.I01958.1.p

Common Name

EUGRSUZ_I01958, LOC104419371

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 306aa MW: 34919.4 Da PI: 6.8737

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.I01958.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.8	1.7e-56	16	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yL++kv + ++++ +++ evd++k+ePwdLp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+ Eucgr.I01958.1.p 16 LPPGFRFHPTDEELITHYLTPKVLDGSFRA-RAMGEVDLNKCEPWDLPGQAKMGEKEWYFFCVRDRKYPTGMRTNRATEAGYWKATGKDKEIR 107 79*************************9.89***********999999*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++vg+kktLvfy+grap+g+kt+Wvmhe+rl Eucgr.I01958.1.p 108 R-MKKVVGMKKTLVFYRGRAPNGQKTNWVMHEFRL 141 9.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-64	10	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.747	16	166	IPR003441	NAC domain
Pfam	PF02365	7.1E-30	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MMSGTMIFEG DEQMELPPGF RFHPTDEELI THYLTPKVLD GSFRARAMGE VDLNKCEPWD 60 LPGQAKMGEK EWYFFCVRDR KYPTGMRTNR ATEAGYWKAT GKDKEIRRMK KVVGMKKTLV 120 FYRGRAPNGQ KTNWVMHEFR LGDGYYQHHL SNSQKNDWVI CRIFEKGPDG KKADQPETLP 180 GGLERLSSFD NEPKASLLPL PPLVESSPFT TTSFSDRPED RNAQKTSLFS SPSSSELDQS 240 LGPAHSFGWS DTVFMHEQAI LRMLLENSAS NAKAEYADFS QARRQDREAT MPTSFQCDVD 300 CLWRN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-54	13	172	17	174	NAC domain-containing protein 19
3swm_B	1e-54	13	172	17	174	NAC domain-containing protein 19
3swm_C	1e-54	13	172	17	174	NAC domain-containing protein 19
3swm_D	1e-54	13	172	17	174	NAC domain-containing protein 19
3swp_A	1e-54	13	172	17	174	NAC domain-containing protein 19
3swp_B	1e-54	13	172	17	174	NAC domain-containing protein 19
3swp_C	1e-54	13	172	17	174	NAC domain-containing protein 19
3swp_D	1e-54	13	172	17	174	NAC domain-containing protein 19
4dul_A	1e-54	13	172	14	171	NAC domain-containing protein 19
4dul_B	1e-54	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.I01958.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010029310.1	0.0	PREDICTED: NAC domain-containing protein 79
Swissprot	Q9FLR3	3e-97	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	A0A059AQT6	0.0	A0A059AQT6_EUCGR; Uncharacterized protein
STRING	XP_010029310.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	4e-93	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Eucgr.I01958.1.p
Entrez Gene	104419371

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]