PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.I01927.1.p
Common NameEUGRSUZ_I01927
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 398aa    MW: 43423.7 Da    PI: 7.4238
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.I01927.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.71.4e-29152211159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dg++WrKYGqK  kg+++pr+YYrCt    Cpv+k+v+r+ ed +++++tYeg+Hnh+
  Eucgr.I01927.1.p 152 MNDGCQWRKYGQKISKGNPCPRAYYRCTVVpACPVRKQVQRCPEDMSILTTTYEGTHNHP 211
                       58**************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-31137213IPR003657WRKY domain
SuperFamilySSF1182901.44E-26145213IPR003657WRKY domain
PROSITE profilePS5081127.393147213IPR003657WRKY domain
SMARTSM007741.3E-34152212IPR003657WRKY domain
PfamPF031068.8E-26153211IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MLKLVEKDPP YPLQMRMFDI LQQEAREISS SNSSNEEADE KPQLVSLCLG RSQHMNDKKE  60
TGESSDPTQD IKTSLTLGLD FKGEFSSKLA PDPHRKSRLE LGNPDEEEGK ETCLSSRIRK  120
TTCDGEENEV SQQEQVKRAR VCVRARCDTP TMNDGCQWRK YGQKISKGNP CPRAYYRCTV  180
VPACPVRKQV QRCPEDMSIL TTTYEGTHNH PLPVSARAMA STTSAAASML LLSGSTFHTG  240
PSFSTYDSYS RSRPIFLHPN PASALNPTIT LDLTDDAPPS ASTMSHFKSK SNIGPTSLLG  300
YDYTSGRPML LPGYVRAQAG PFGQEKRPQQ EQINHGTSGD KDQQIYSQQS LTETLTKMLT  360
SDPSFQSIVA AAISSMVGGD KAPTGQGGTG RFGPAGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-201522131777Probable WRKY transcription factor 4
2lex_A4e-201522131777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.I01927.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029291.10.0PREDICTED: probable WRKY transcription factor 72
TrEMBLA0A059AQQ50.0A0A059AQQ5_EUCGR; Uncharacterized protein
STRINGXP_010029291.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29592868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.15e-53WRKY DNA-binding protein 72