PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.I01782.1.p | ||||||||
Common Name | EUGRSUZ_I01782, LOC104419249 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 209aa MW: 23430.4 Da PI: 6.0172 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.3e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l d+++ +G g W++ a+ g+ Rt+k+c++rw++yl Eucgr.I01782.1.p 16 KGPWTLEEDLILMDYIANHGEGVWNSLAKAAGLQRTGKSCRLRWLNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 5.1e-16 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l++++ ++G++ W+ Ia++++ gRt++++k++w++ Eucgr.I01782.1.p 69 RGNITPEEQLLIIHLQSMWGNR-WSEIAKHLP-GRTDNEIKNYWRT 112 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-23 | 9 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.416 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-30 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.7E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.7E-16 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.21E-10 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 23.899 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-23 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 69 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.82E-12 | 73 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MDKKPCYRTQ DPQVRKGPWT LEEDLILMDY IANHGEGVWN SLAKAAGLQR TGKSCRLRWL 60 NYLRPDVRRG NITPEEQLLI IHLQSMWGNR WSEIAKHLPG RTDNEIKNYW RTKIQKHIIK 120 QSETEINDLT IPPSSANACT DHRGVSAANT IEIACSPPSD QGGSGETMLS ALPPAQELND 180 SACWSVEDLW PIQSLISGMG DDAQYYSV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 12 | 118 | 3 | 108 | B-MYB |
1h8a_C | 2e-25 | 11 | 118 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.I01782.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010029159.1 | 1e-155 | PREDICTED: myb-related protein 340 | ||||
Swissprot | P81391 | 3e-74 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A059APX0 | 1e-153 | A0A059APX0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010029159.1 | 1e-154 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40350.1 | 5e-75 | myb domain protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.I01782.1.p |
Entrez Gene | 104419249 |
Publications ? help Back to Top | |||
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